AMCG00008703


Basic Information

Item Value
gene id AMCG00008703
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9283550 ~ 9287687 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008703
ATGGGCAGTGCGTTGGCGAAGTGTGCCCTCGCCGACCTGGCAATTCAATGGCTCGGGTGGGCTGTGGCTTCCGCATTGAAAACGGAGAAGTTCTACGATTTGGCGGGTGAGTCCCGGCTGTGCTCCACAGGGCGCCTGCACGGTTCGGGAACCTTCGTCCTGCTCGCTCACCTCAGCCGGCGGTGGGGAGGGTCCGGCTACCGGCGGCAGAGCATTCAGACCGGCCTGGTGACAGTGTGGGGGCTGCGGTTGGGCTTGTTCCTGTTTCTGCGGATACTGCGTGAGGGGAAGGACCGGCGCTTCAACAATGTCAGGGACGATCCGGGCACTTTCTTCACCTACTGGACCGTGCAAGCTGTGTGGGTGTTCGTGACGCTGCTCCCCACCCTGATTCTCAACACGGAGCGCCGAGACCTGCCGCTGGGGGGCCGGGACTACCTGGGCTGGGCCATGTGGGGGCTGGGCTTCGCCACGGAGGCCATCGCAGACCAGCAGAAGTGGGACTTCAAACGGGACCCTGATAACAATGGGAAGTTCATCCAGAGTGGACTGTGGGCCTACAGCCGCCACCCCAACTACCTGGGGGAGATCCTGCAGTGGGGCGGCCTCTTCCTCTCGGCCTCCTCGGTGATGCGGGGCGCCCAGCAGCACCTCAGCGTGGTGTCGCCGCTCTTCGTCTGGTTCCTACTGCGCTACGTCAGTGGCATCCCCATCCTGGAGAAGCAGGCGCTGAAGAAATGGGGCTCGGACCCGGCCTTCCAGCAGTACATCCAGAACACCCCCCTGCTCTGGCCCTTCCTCGGATGACCGCCCCCCCAACAATCCTACCCAGCTACACATACAGAGCACAGCAAGGGCTAAAcctgacagagaaagagagtaCAGTACAGGAAGGTTATTTTCAAACTTGAGTAATGATGTGGCTTTCCCTTAACTTACAAAACAAAGGTTGTGTGctttaatacttttaaagtgCTGCAGTAGAACAAAAACTCTCCCGTCCTAAATAACCTCATGTAGCACTtgagacaggaaaacaaaatactgaaggGATGTCCTTGAGGGCCAGATATCACAGGTCTTATAGGTCTCGCTGGGCCTCCATCTTGTAAAGACCTGGGAAGAAATGTAATCATAACCAATAAAGTGAACACCATTCGTTATTGACCACTGGATTAGGAGAAAGACCCCTCATTGATTCAGAGCTTGGGGGTTTAGGGGGGGGACGACACATTCTACACTACATTCAGATCTGCAATGCTCAATACAAATTCCATACAGGAAATCAATGCTCCCAGTACAGCGTGTGCCCAGTTCCTCATTTAGACAACTCTCAGTTCACTGTGGTCATCTATTATAAACCAAATTATCTCAGATCAACTGTAACAGTGGAGTTCCTCTTGGCAGCTTCATTGAACATTTGAAAGTCCACCAGTTCTAAATACATACAGGAGacaaaaagtgtgttttaaaatacattactgtacttttttgtttcttgaaccatctttattttttattttttaattcccccCCTCGGGAGGAcaactttattgtttatttaatcactttcagttagtttaaaaaaaaaatacaaaaaaatggaaTAACAGTTTCTTTACACTTCCCTACCCCCAATAACCCCTCTAACCCCACCCAACCCTCTTCCACCCACGCTCCCCTACTACCCTTCCCTACCCATCCAAGACTATCTGTGGccaagagacagacagacagacaaacaatcAGCAGagtaaacaattaaatcaacagGTGGACAATTAGACAGACGGACTGATGACACGTCAGCAAACTAAGATATAAACGTACAATTGTGCGCATATATAGGATACCAGTTGGGATGTATCACTCACGTCCAAgcataataaagaaaagagggggggggaagGAGGGGACACAAAcccacataaataaattaatacattattaacagactgtttgggtgtgt

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008703 True 1969 mRNA 0.50 5 9283550 9287687

Neighbor

gene id symbol gene type direction distance location
AMCG00008704 NA coding downstream 27896 9232126 ~ 9255654 (-)
AMCG00008702 NA coding downstream 54091 9223114 ~ 9229459 (-)
AMCG00008705 cs,LOC107707042,LOC107715034,LOC107671863 coding downstream 78158 9197433 ~ 9205392 (-)
AMCG00008698 LOC105017093,LOC106583345,LOC106565408 coding downstream 113268 9150060 ~ 9170282 (-)
AMCG00008697 rnf41,LOC107723732 coding downstream 180670 9081827 ~ 9102880 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding upstream 33890 9321577 ~ 9326719 (-)
AMCG00008713 NA coding upstream 126011 9413698 ~ 9417891 (-)
AMCG00008717 NA coding upstream 244146 9531833 ~ 9554934 (-)
AMCG00008719 NA coding upstream 275213 9562900 ~ 9565171 (-)
AMCG00008718 bloc1s1,LOC107573571 coding upstream 291702 9579389 ~ 9587169 (-)
G50915 NA non-coding downstream 133612 9144344 ~ 9149938 (-)
G50836 NA non-coding downstream 442895 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 709212 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 899543 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 922588 8357450 ~ 8360962 (-)
G50999 NA non-coding upstream 88885 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 93064 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 100571 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 101137 9388824 ~ 9389048 (-)
G51006 NA non-coding upstream 101524 9389211 ~ 9389570 (-)
G50788 NA other downstream 623533 8656728 ~ 8660017 (-)
G50739 NA other downstream 912220 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 989196 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 990064 8281215 ~ 8293486 (-)
G50710 NA other downstream 1014224 8269023 ~ 8269326 (-)
G51008 NA other upstream 103156 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1050638 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1273179 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1383262 10670949 ~ 10718201 (-)
G51241 NA other upstream 1388069 10675756 ~ 10712485 (-)

Expression


Co-expression Network