AMCG00008705 (cs,LOC107707042,LOC107715034,LOC107671863)


Basic Information

Item Value
gene id AMCG00008705
gene name cs,LOC107707042,LOC107715034,LOC107671863
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9197433 ~ 9205392 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008705
ATGGAGACCCCTACCATGGAAAAATCTTCACCAGGGTCCATTGGCTTTACCTGGTCTTTTGTGGTTACTGTAGGTGACAGTGACATGCTTTTTGTCCCACAGAACCTGAAGGATGTCCTATCGGATCTCATCCCCCAAGAACAGAGTCGCATCAAGTCCTTCAAGCAGCAGTATGGCAAAACCACTATCGGCCAGGTCACAGTGGACATGGTCAGCTGGGTGTCTAAAGAATGGGCCAAGAGAGCCGCACTGCCCTCCCACGTGGTCACCATGCTGGACAACTTCCCCACCAACCTGCACCCCATGTCCCAGTTCAGCGCCGCCATCACCGCCCTCAACAGCGAGAGCTCCTTCGCCCGGGCCTACTCCGAGGGTGTTAACAAGGCCAAGTACTGGGAGTTCGTCTATGAGGATTCGATGGATCTGATCGCCAAGCTGCCCTGTGTGGCGGCCAAGATCTACCGCAACCTGTACCGTGAGGGCAGCAGCATCGGCGCCATAGACTCCGGCCTCGACTGGTCCCACAACTTCACCAACATGCTGGGCTACAGCGAGGCGCAGTTCACCGAGCTCATGCGGCTCTACCTCACCATCCACAGTGACCACGAAGGGGGCAACGTGAGTGCCCACACTAGCCACCTGGTGGGCAGCGCCCTGTCGGACCCCTACCTCTCCTTCAGCGCCGCCATGAACGGGCTGGCAGGGCCTCTCCATGGACTTGCCAACCAGGAGGTGCTGGTGTGGCTGACCCAGCTGCAGAAGGAGCTGGGCGGTGAGGTGTCGGATGAGAAGATGAGAGACTACATCTGGAACACCCTCAAATCTGGCCGGGTGGTCCCAGGATACGGCCACGCGGTGCTGAGGAAGACGGACCCGCGGTACACCTGCCAGCGCGAGTTTGCTCTGAAGCACCTGCCCAGCGACCCCATGTTCAAGCTGGTGGCCCAGCTGTACAAGATCGTGCCCAACGTGCTGCTGGAGCAGGGCAAGGCCAAGAACCCCTGGCCCAACGTTGACGCCCACAGTGGGGTGCTGCTGCAGTACTACGGGATGACGGAGATGAACTACTACACGGTGCTGTTCGGAGTGTCCCGCGCGCTGGGCGTCCTGTCCCAGCTGATCTGGAGCCGCGCCCTGGGCTTCCCCCTGGAGAGGCCCAAGAGCATGAGCACTGACGGGCTGATGGCACTGGTGGGTGCCAAGTCCGGGTAA

Function

symbol description
cs Predicted to enable citrate (Si)-synthase activity. Acts upstream of or within response to activity. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Is expressed in brain; gill; heart; and muscle. Orthologous to human CS (citrate synthase).

NR:

description
Citrate synthase

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0004108 citrate (Si)-synthase activity molecular_function

KEGG:

id description
K01647 CS, gltA; citrate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008705 True 1212 mRNA 0.60 7 9197433 9205392

Neighbor

gene id symbol gene type direction distance location
AMCG00008698 LOC105017093,LOC106583345,LOC106565408 coding downstream 27151 9150060 ~ 9170282 (-)
AMCG00008697 rnf41,LOC107723732 coding downstream 94553 9081827 ~ 9102880 (-)
AMCG00008699 NA coding downstream 130003 9036933 ~ 9067430 (-)
AMCG00008694 NA coding downstream 161490 9019960 ~ 9035943 (-)
AMCG00008692 NA coding downstream 229549 8958278 ~ 8967884 (-)
AMCG00008702 NA coding upstream 17722 9223114 ~ 9229459 (-)
AMCG00008704 NA coding upstream 26734 9232126 ~ 9255654 (-)
AMCG00008703 NA coding upstream 78158 9283550 ~ 9287687 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding upstream 116185 9321577 ~ 9326719 (-)
AMCG00008713 NA coding upstream 208306 9413698 ~ 9417891 (-)
G50915 NA non-coding downstream 47495 9144344 ~ 9149938 (-)
G50836 NA non-coding downstream 356778 8837359 ~ 8840655 (-)
G50784 NA non-coding downstream 623095 8574014 ~ 8574338 (-)
G50740 NA non-coding downstream 813426 8372506 ~ 8384007 (-)
G50736 cdk2,LOC107683630,LOC107570445,LOC107737371,LOC107696023 non-coding downstream 836471 8357450 ~ 8360962 (-)
G50999 NA non-coding upstream 171180 9376572 ~ 9379452 (-)
G51002 NA non-coding upstream 175359 9380751 ~ 9381754 (-)
G51004 NA non-coding upstream 182866 9388258 ~ 9388608 (-)
G51005 NA non-coding upstream 183432 9388824 ~ 9389048 (-)
G51006 NA non-coding upstream 183819 9389211 ~ 9389570 (-)
G50788 NA other downstream 537416 8656728 ~ 8660017 (-)
G50739 NA other downstream 826103 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 903079 8270324 ~ 8294354 (-)
AMCG00008668 LOC106456382,LOC108433351,LOC107714908,LOC103467923,LOC108433416,LOC103367934,LOC102193505,LOC108255233 other downstream 903947 8281215 ~ 8293486 (-)
G50710 NA other downstream 928107 8269023 ~ 8269326 (-)
G51008 NA other upstream 185451 9390843 ~ 9393227 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 1132933 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 1355474 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1465557 10670949 ~ 10718201 (-)
G51241 NA other upstream 1470364 10675756 ~ 10712485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021827 cs coding NC_007134.7 CM002907.2 33907899 ~ 33928316 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_03515448_03525499 CS, CS.L coding CI01000001 null 3514972 ~ 3525499 (-)