AMCG00008707 (tfcp2,LOC107715039,LOC107671887,LOC106572516)


Basic Information

Item Value
gene id AMCG00008707
gene name tfcp2,LOC107715039,LOC107671887,LOC106572516
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9355092 ~ 9379579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008707
GACTGGGGAGAGAGGAGACGAGGGCCGGCGGATAAACAAACCCGCACAATGCGCAGTGCTGTAGACATTTCCTAGTTTACACAGAAGGGGATCTCCCGCCTAGTGTGAGCTGTCTATTCACCCTCCCCGATCctgatttcagttgtttttacaTTGCAACCTGTTTATCGTGCGGTGCGGAGAAGAATGCGGTGCatGCACAATAAGAGAAGCCAGGAGCCCGCGTAGCTGCCCGTCCCGTCTGGAGTTGGACTTCTGCCGCGGCGTGCTGTCTCCGGCCGGGCTCGACTCGGACTCGGACCCGAGGCCCCGCTCTCGTCGGCCATGGCGTGGGCGCTGAAGCTGCCGCTGGCGGATGAGGTGATCGAGTCGGGGCTGGTGCAGGACTTCGATGCCAGCCTCTCCGGGATCGGGCAGGAGCTCGGAGCCGGGGCGTACAGTATGAGTGATGTCCTGGCCCTGCCCATCTTCAAGCAGGAGGAGTCCAACTTGCCTCCCGACAATGAGAACAAGATCCTGCCTTTCCAGTATGTGCTGTGCGCCTCCACCTCCCCCGCCGTCAAACTGCACGACGAGACCCTCACCTACCTCAACCAAGGGCAATCTTATGAAATCCGAATGCTGGACAACCGGAAGATGGGCGAGTTGCCGGAAATTACCGGCAAGATGGTGAAGAGCATCATTCGCGTTGTGTTCCATGACCGGCGGCTGCAGTACACCGAGCACCAGCAGCTGGAGGGCTGGCGCTGGAATCGGCCTGGAGACCGCATCCTGGACCTGGATATCCCCATGTCAGTGGGTATGATTGACCCCAGGGCCAACCCTACTCAGCTCAACACTGTCGAGTTCCTGTGGGACCCGTCAAAGAGGACCTCTGTGTTCATCCAGGTGCACTGCATCAGTACGGAGTTCACCATGCGCAAACATGGGGGTGAGAAGGGCGTCCCGTTCCGCATCCAGATCGACACCTTCAAGGAGAACGACAACGGAGAGTACACTGAGCACCTGCACTCGGCCAGCTGCCAGATCAAAGTGTTCAAGCCTAAAGGAGCGGACAGGAAACAGAAGACAGACCGAGAGAAGATGGAGAAGAGGACACCGCAGGAGAAGGAGAAGTACCAGCCGTCGTACGAGACCACCATCCTGACTGAGTGCTCTCCATGGCCTGAGATTTCCTATGTGAACAACTCCCCCTCTCCAGGCTTCAACACCCCGCACAACAACTTCCCTGTAGCAGAGGGTAACGGTTCCCCCAATCACCAGCCAGAGCCAGTGGTCCAGGTGGCCGATAATCTGTTGCCCACGGCGACGCCGCAGGAGGCCCAGCAGTGGCTGCACAGGAATCGCTTCTCCCCGTTCTGTCGCCTCTTTACCAACTTCTCGGgtGCCGACCTGCTGAAGCTGACCAGAGACGACGTCATTCAGATCTGCGGCCCAGCGGACGGCATCAGACTCTTCAATGCACTGAAAGGCCGGGTGGTGCGGCCGAGGCTGACGGTGTACGTGTGCCAGGAGTCCCAGCAGGGCCGAGACCAGCAGCTGCAGAAGCAGGAGAATGGAGACGCAGCCAACAGCACTTTCTTCGTGTATCACGCCATCTACCTGGAAGACCTGACGGCCACAGAGCTGACGGAGAAGATCGCCCAGCTCTTCAGCATCTCCCCCCGGCAGATCAGCCAGATCTACAAACAGGGGCCCACGGGCATCCATGTGCTGGTCAGCGACGAGCGGAATCGAATGATGGCTACCACATCATCTTGAAATGAAGACATTTGAGGGGGTTGTGCTGGATCTGGTCAACTCTTCTGGCCCATAACCAATTCATGGAGGTCACGTTTTTGTACAGAAGACCATCCAACTGCCTTGCGGAGCTTGGCTTTGAACTGCTGAAAGGATGGCACAGGGGCTTTGAGAGTGAAGAGGCctcacttcattttattttatatatatgtatatatatatctgtgtgtgtgtatatatacatattcattttaCCTTCTCACCTTCTTCTCCTTGGATTCAAAGGGATTGCCCTTCACTGTCCCTGTCCCAGATGTTTTGCAAGCAGGATCCTTAGCTTCACCTTCCATCGCCTAGTCCTGCTGTAGTTCGATGTGCCAACGCCAGCACTGGCATTAATTGcccatcttgtttttttttttttttttttttttaatgtcctgTCCCCACCCCTGTGGACAGTGCTGTCAGTGCTACCGAAC
>TU63777
ATccttagtttaaaaaaaacagattatttgttaaaaacaatctgatgtaCTTGGATATATTCAGAACTCATGGTATCCCAATTTGCCTTTGTCTCTGATTTGTACTTGGCTGGATTGCTTTTGATTTAGTGGTGTTTTTCAGCGggtttctgtttccctgttttccAGTAACGGTTCCCCCAATCACCAGCCAGAGCCAGTGGTCCAGGTGGCCGATTTATCCTGCCATCTTCTTAGGAGAGACCTTGAAACCTCCCAGAATCTGTTGCCCACGGCGACGCCGCAGGAGGCCCAGCAGTGGCTGCACAGGAATCGCTTCTCCCCGTTCTGTCGCCTCTTTACCAACTTCTCGGgtGCCGACCTGCTGAAGCTGACCAGAGACGACGTCATTCAGATCTGCGGCCCAGCGGACGGCATCAGACTCTTCAATGCACTGAAAGGCCGGGTGGTGCGGCCGAGGCTGACGGTGTACGTGTGCCAGGAGTCCCAGCAGGGCCGAGACCAGCAGCTGCAGAAGCAGGAGAATGGAGACGCAGCCAACAGCACTTTCTTCGTGTATCACGCCATCTACCTGGAAGACCTGACGGCCACAGAGCTGACGGAGAAGATCGCCCAGCTCTTCAGCATCTCCCCCCGGCAGATCAGCCAGATCTACAAACAGGGGCCCACGGGCATCCATGTGCTGGTCAGCGACGAGATGATCCAGAACTTCCAGGATGAGTCTTGCTTTGTTCTGGACACGATGAAAGCGGAATCGAATGATGGCTACCACATCATCTTGAAATGAAGACATTTGAGGGGGTTGTGCTGGATCTGGTCAACTCTTCTGGCCCATAACCAATTCATGGAGGTCACGTTTTTGTACAGAAGACCATCCAACTGCCTTGCGGAGCTTGGCTTTGAACTGCTGAAAGGATGGCACAGGGGCTTTGAGAGTGAAGAGGCctcacttcattttattttatatatatgtatatatatatctgtgtgtgtgtatatatacatattcattttaCCTTCTCACCTTCTTCTCCTTGGATTCAAAGGGATTGCCCTTCACTGTCCCTGTCCCAGATGTTTTGCAAGCAGGATCCTTAGCTTCACCTTCCATCGCCTAGTCCTGCTGTAGTTCGATGTGCCAACGCCAGCACTGGCATTAATTGcccatcttgtttttttttttttttttttttttaatgtcctgTCCCCACCCCTGTGGACAGTGCTGTCAGTGCTACCGAACTCCATCCAGATATTTCACAAGCCAATGGATGAAAATCTGTGTGGGACAATGCCATTGGTTTAGTGGAGCCCGTTTTGAAATGGATGGAGGTTAAGCCATGAAGTGTGGCCGTCACTGACCGCTGCTCTCCTCAGCCAAGCCACCGGAGATGGCCTCTGCAAACCCTCGAAGGAACTGCGCCTCGTGGTCATtttcttgtacattttgtaagCGTCGGTGCCGTGTAGCATAGCAACAGTCTGCATGTTTAGACACGTTAGCGCTGTCGTGATTGGGAAGAAGGGAAAGAGCCTTCATCTGTAAGCGACGTGCTCATCAAAAGCCCTTAATTAcagcttgctttttgttttccgtGTCGACACAGCTGTCTGCACGGGAGATGGATTTATGTGCGAGAAAACCCTGGGGCTTAAACTCCCGAACACTGGCGCTTCCGAGATAAGCTGCCGATCCTCGCGCTCATGAATCGTGAAGCACTCTGAGGATCATGGGAGTTTGTACAAGACGCCATACAGACGTCCATGCACATGCACTATTGATGTGATTGATGGTGTTCTCTACCAGGCTGATAACGGTGCTCTGTATTCCTGACACAGCTTGCATCGTAAgggtgaaggaaaaaaaaaaaaaaaaaaaaaaagacaaatatttattaatattccCCCAAACTCCCCTTACCCTCCTCCCTTCTACTTCCCCTTGTACccttgtatgtgtgtttctgaagGTTTTTTACGATTCTAGTacgttttcatttttgtgtgtgtaatgaaacCTCAACTGCTCTAACCTGGATTGGTCCAGATCTGTACTTGAGATCAGTTGAGACTGCCTAGTAAGCAGTTGTAGGTACATGTTGCAAACCTTGTACTTCACCATTTCAGCAACTGTTAATAATCGGAGCCTTTGCATCTGTTCtgaaaagttttattttttttagatcttttttaatttgtttgcacGTGCAAGTGTAAATATGTTTGCATGCTGACAAGTTGCAACCCCAGTAAAACCTGTAACGGGCACGAGATAAGCTCAGTGCGTAAGGGTTTTGCGAAGAATTATGGTTTCCTGGGGGTTCTGGCTATTCTTTTTATCAAGGTCTTTGAGAATAATCTTGTGGTCTTCAGTACAGCAGCGGTCTTTATTGCGCTGTAATGTGGCCGTTTAGGAACTCGGCACTGTAGCATTTCCATTACGATGCCATGATTGGTCTAACGTGCAATAAATCGGGGGCTTTGTAATTCACTTCCACTTAATCTTGTGTCTGGATGCACACTGAGGATACAGGACTCCGCTATCCCATGGAGAACATATCCCATGCACATGACAAATGTCGGCCATTCTTCCTCCATTTTGGAGGCCCTTCCAGCATCGCCTTAAGCAGAGGCTTATAGATCCTGAATATAAGACCTGTTAGTCGGTGAATAATGATGCAGCGAGGGCGCGGTCTGAACTAGCCCCAGTGAGGGCGTCGAAGTCGAAGGGTGGGCATGCGTGACAGAATGCTTCCCCTCCACCCCAGCCACGGAGACGCTGTGCAAATGACAGTGGGGGTCAGTCGAGTTTGGCTCCTAGTAGTGGCCCTGCAGAGCCCCACACTAGCCCACCACACCGCTTTTGGAATAGACAAAATCACCACTGTCATAATTGTACCAGTAATGACTCTTGGGGCAAGACACTACACTGCTTTACATACACTAGAGGTTAGTAGTATTCCAGTGTGGACCCAGGCAGAGACCTCTGGTGTGACTGGACTCTTTCATCCCATACCCTCATGTGTATAGTTATGGTAAATATTACCAATTAAGCAAATTAGTTGGATTAATTCATTTAGAGTACAGATGGAGCAAAAGCCTGAAAGTTATACTGTCCTTGAATATAGCTTTGGCCCTCCCCAATGCCCTAAAGCTATGTGAGGGGGCATATTAGCCAGATACTTTCACCTTGGGTTGTTCCtggtaatttaatgtaataggTAAATGAGGTACATTTTAGACCATCTTTATTCTATATATGTAGGCCTGCTACAGTATCATgagtttcaatgttttattctttctttctctctctctctctcttgctgacCTAATTTAGTAATTTCATATGGTAGAGTGAGAGAGGTACAACTGAGCATCTGTCTTCATACTGGTGACCTTCCAATAACTCAAGTTCATTGGTTTCCCGttgaattttatttctgtaaactttttttttttttttaatctagtgTGTAttcaatgtttatattttctgtcttgtgtaatgttttcatttggttCTGAAATGGAGGATGGGGGCATGTATTTGGTATAAGTATTTTTACtttgtccattttttttaatgtaatattggaAACTGTATTCACTGGGGCAGTGAAATAAATTCCGTAAGAaatctttttctcttcttttttgtgtctgaataaaatgtcaCTCGTTACAATTGAATAACATGTAATCTAACATTGACATCCCAGTGCCCTCCAGATCTCTCCTAATGGAATACTGTTCCAGCATTGATT

Function

symbol description
tfcp2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TFCP2 (transcription factor CP2).

NR:

description
alpha-globin transcription factor CP2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008707 False 2222 mRNA 0.56 15 9355092 9377055
TU63777 True 3767 lncRNA 0.45 8 9369132 9379579

Neighbor

gene id symbol gene type direction distance location
AMCG00008708 NA coding upstream 4575 9338831 ~ 9350517 (+)
AMCG00008706 NA coding upstream 45493 9290688 ~ 9309599 (+)
AMCG00008700 NA coding upstream 72485 9270362 ~ 9282607 (+)
AMCG00008701 coq10a,LOC102221461,LOC106917050,LOC102797363 coding upstream 170562 9175620 ~ 9184530 (+)
AMCG00008695 NA coding upstream 222854 9123241 ~ 9132238 (+)
AMCG00008712 NA coding downstream 9832 9389411 ~ 9391756 (+)
AMCG00008711 NA coding downstream 20907 9400486 ~ 9408758 (+)
AMCG00008715 NA coding downstream 108916 9488495 ~ 9525687 (+)
AMCG00008716 NA coding downstream 148319 9527898 ~ 9529672 (+)
AMCG00008714 NA coding downstream 152212 9531791 ~ 9537457 (+)
G50983 NA non-coding upstream 687 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 160454 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 161407 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 162173 9192530 ~ 9192919 (+)
G50929 NA non-coding upstream 162715 9191777 ~ 9192377 (+)
G51000 NA non-coding downstream 12448 9392027 ~ 9398369 (+)
G51065 NA non-coding downstream 261177 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 412559 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 593717 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 599819 9979398 ~ 10071199 (+)
AMCG00008710 NA other upstream 38941 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 232280 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 267125 9081827 ~ 9087967 (+)
G50747 NA other upstream 688544 8450166 ~ 8666548 (+)
AMCG00008664 Tuba1a,LOC107714908,LOC108433351,LOC103385219,LOC108255233,LOC108275946,LOC105930792 other upstream 1030314 8278853 ~ 8324778 (+)
AMCG00008725 NA other downstream 535915 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 547808 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1312798 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 1448989 10828568 ~ 10846436 (+)
G51297 NA other downstream 1605311 10984890 ~ 11040674 (+)

Expression


Co-expression Network