AMCG00008714


Basic Information

Item Value
gene id AMCG00008714
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9531791 ~ 9537457 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008714
GGGCTGCAGTCTGCTCTTACCCTTCTACCCATAACACGTGATGCGGGTAATGGCGGCGCCCGGTGTGGCCTCGGTCCCTCTGTCACATGCAGGAGGCGTGTGCTGATGTCACAGCCGAACTCAACATGGCCGCAGGCAGGAACATGCTGCTCGGAGCGTGTGTGGGAGTCCGGGCTCTGAGCGCCGTGCTGTGCAGACAGTCCCGCTTGAGGACGGCTGGGACCCGGCTGTATGTCACCAACACCGCGAAGAGGGACCTGCAGTTCAAGCTGGACGAGCGCACGGCCCACAGCAGCCTGGACCTGTTCAAGAAGGACATGGGTGTAATTTACCGGGTTCTGGGCCTGGACCCCACCTTGGTGCCGGACAATCCCGAGCGCTTCCTGGACTGGGCCGTGGTCCTGGGGGACAGCTCGGTCACGGGGGGGCGGCACTACTGGGAGGTGACCGTCTCCAAGTCGCAGGAGTTCCGCATCGGAGTGGCAGACCCGGCCATGTCCAGGGAGGAGTGCGTGGGCACCAACAGCTGCTCCTGGGTCTTCAGCTACGTCCATCGCAAGTGGTACGCCATGACCACCAACAAGATGGCACCCATCGCCCTGGTGGTCAAGCCGGACAGGGTTGGCCTACTGCTGGACTACGAGGGTGGGCGACTGGACCTGGTGGATCCCCAGAATTCCCAGGTCGTCCATTCCATCAAGGCTTCCTTCAAGAGCCCCCTCTGCCCGGCCTTTGCCCTGTGGGATGGGGAGCTGCTGGCTCACTCGGGCCTGGCTGTGCCTGAGGGTCTCGCCTGATCTTTTAAGGGTGGGAGGTGGGGATTGTGTGCATTGGTAAGAAACGGACTTTATCAGCTCGCTCAGGTCCCAGCATCGGCAAAATTCAGACCACTGACAACAGTCGCATGTGAATGTGATACCCAGAGGGGTTTCTGTTTTCAGACCTTTGTGGTGTAATCTCCATCCCTCATCCTCCTGGGTGCTTTGTGATGCTCCTCAGTGTTCAAGTGCTTCGGACCAACCCAGAAGGACACCTCTGCAGAAGTTTGACATCTTCATCTGTCATTCGTGGGGCATGTTGACATCACATCTCCCCTTTTTGGTTTTGGAGCTTCAGAGCTGGGCGGCATGTAAAATATTCGTCACTAAGTATTTCTCCGTTGTTCAGATCGCACGGCCAGCTCACAACACTACAGAGCATTGGACTGGGCCGGGCTTGAGAACAGATATCTGCCCCAGGGACCCATGGATCTCAAATTTCAGTAGACCACAAAGTATACACCACAGAGTATTCTTTATCTTGTTTCCGTAGCATTGACCCATGTCTGGTGAAGTATAGTGGTGACTCCATTTAAACTCCAAAAAACATCATTGCATTTTACTGTTTTGATGTCTTTGATGTTAAAACAAGccttgtttgtttcactgaaGGCCTTGAGGCCAGGGACTCTgccaccctggtcctggagagaaaATCTGTCCAGTTTTACAAGTACCTCTAAATAGGCAGTGAGTATAGATCACGAGTGGctaaccctgttcctggagagccacaatcctgcaggctTCCAAgtctctaaatcaccaatctATGGATACTTTGATACCTTGCCAAATTAAGACCAacaatttgttcaattaagcagtCAACGATttggatagaacaaaaacctgtaggccccgtggctctccaggaccgggGTTAGCCATCCcttgtatacattaaaaaaaaaaaaaaaaaaaagttcccttGTACAAACTGGTCTAGAGTTCAGTGGCCAGCTTGAACAGAAACCAGGACCAGTGTTGCAGATCCCTGTGTTGTAtcaaacatctttaaaaatgtcttagCATTTGATAGGTAAGGACAGTCCAGGTGTGATTTTGGCCAGTTATATGGGTATATAAAGGATGTATTAGAGGGCAGCAATAGCAGTGTATCTATATGTTTTTGTACTATCGTGTAAgagaaattaaaccaaaattaAGCTCTACCCGAGTCCTGCTTAAGCACCGATTCTCTGCACTGTTGTTTGGTTATTGTAACACTGTTGTTACATTCTTTGGCCAATTCATAGTTCTACAGCTGGgtgtcattgtgttttgtgttcaaaCCCCTGCATGTCTTTACATTGGGTTCATATCCCACTGCTATAATGGTGTCACACAAAATGTCTAATTGTCCAGCTTCTAAAAAATGGCTTGGTTGAACTAAATCTGATTATTGTGGGCTCAGAGATCAATGCTCCATTACtgatgaaattaattattttttaatcagtagGACACTGCATTGtctacagattttttttatttatagttagattacattttatatattttttctggacCCATATGGAACTCAGAATATTGTAGTTCCTAAAATGATCAAACTTTTAATATTCTGAACCAGTGCAGTAATTTGAGCTGCATTGGGCTCTGatccttttgtttgttgtagCCCTGCTGTCATAGTCCCTTATTCCACCCTCCATTTCCCCCCAATTGTAAATTCCAGGCAAATTTGTGATGAAGTTTGAATAGAAGAAAACTTACACAAACCCTTCAATATTGCCcaactttatttataatacaacaTTTATGTACATGAATCACTGTTTAATACAAGGTGCATGAAATAATCTTCCTACTTTTGAGAAGATATTGATGGTCCTTTGTACAAAACCTATGCTGAAAGATGATGTCATTTTCACTCAGGCAGaagaaagttgtttttttaaagtgagtTTCCAATTTTAACTGTCTCCTAAGCTATGAGCCCCACAGTGACTCCATTGTTCAGTTTTCTCTGGCTACTGTGCATACAATCATGTAGAATGATTTTGGAGACCACTAGCCCTATAAGCGACCCTCACACAGGTAGGCTTTCTATGCCACTGGAATTTGCATGGGAGAATACAGATTTAATAGAAATTTGAATTAAGATTACTTTTCCTCTAAGGCACTTTAACACATATAAGCacttcatattttcatataaattagaataatattACACAACTTTGGTGTAGCCTTctattcagaaaaataaatacatcggAAACACAAGGGCGCTCACTGTTAATGTATCGGCGCTACCTATCTCTACTGTGTGCTTTGGAGGAGAGCAGCAGGGGTGGGTGGAGGTTATATCCTTACCAGATCCCAGTCAGACTGGGAGTGACTGAAGTTCGTCAGCCCAGATTGATTGGCATGGAAGCAGCGGTCACTCAATGGTCAATGTCAG

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008714 True 3246 mRNA 0.46 2 9531791 9537457

Neighbor

gene id symbol gene type direction distance location
AMCG00008716 NA coding upstream 2119 9527898 ~ 9529672 (+)
AMCG00008715 NA coding upstream 6104 9488495 ~ 9525687 (+)
AMCG00008711 NA coding upstream 123033 9400486 ~ 9408758 (+)
AMCG00008712 NA coding upstream 140035 9389411 ~ 9391756 (+)
AMCG00008708 NA coding upstream 181274 9338831 ~ 9350517 (+)
AMCG00008720 NA coding downstream 83652 9621109 ~ 9639246 (+)
AMCG00008722 NA coding downstream 154634 9692091 ~ 9695072 (+)
AMCG00008721 LOC106566152 coding downstream 167125 9704582 ~ 9735738 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding downstream 324362 9861819 ~ 9910773 (+)
AMCG00008736 NA coding downstream 679881 10217338 ~ 10219366 (+)
G51000 NA non-coding upstream 133422 9392027 ~ 9398369 (+)
G50983 NA non-coding upstream 177386 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 337153 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 338106 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 338872 9192530 ~ 9192919 (+)
G51065 NA non-coding downstream 103299 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 254681 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 435839 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 441941 9979398 ~ 10071199 (+)
G51157 NA non-coding downstream 682776 10220233 ~ 10222915 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 152212 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 215640 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 408979 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 443824 9081827 ~ 9087967 (+)
G50747 NA other upstream 865243 8450166 ~ 8666548 (+)
AMCG00008725 NA other downstream 378037 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 389930 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1154920 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 1291111 10828568 ~ 10846436 (+)
G51297 NA other downstream 1447433 10984890 ~ 11040674 (+)

Expression


Co-expression Network