AMCG00008715


Basic Information

Item Value
gene id AMCG00008715
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9488495 ~ 9525687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008715
tttttcgcAGTGTCAGCGTACTGATTGGAGCTCCCAAGGCCAACACCAGCCAACCGAACATCACTGAGGGTGGGGCCGTGTACTACTGCCCGTGGAGGAACCGGCAAACGGACTGCTACGTCATCGAGTTCGATACCGAAGGAGACCGCACGCACACCTTCAATGACACCAAGAAGCAAGTGGAGTTCAAATCCCACCAGTGGTTTGGAGCCACTGTACGCTCCCATGAGAACACCATCTTGGCTTGTGCACCAAAGTACTACTGGCGGACCACCAAAGATGAAGAGGCCTCCGACGCCACAGGCTCCTGCTTCCTGTCGATCAACAATTTCACTAAGTTTGTGGAGTACGCCCCCTGCCGCACAGAATTTGCGAATGCAGCTGGACAAGGATACTGCCAGGGAGGATTCAGTGCTGACTTCACAAAGAATGGGAGGGTTGTCCTGGGGGGGCCTGGCAGCTACTTTTGGCAAGGTCAGCTGATCTCGGCCACTAAGGAGGAGATTGTTAAGGCCTACTACCCGCAGTACTTTGTTTTACCGGTGCACGGACAGATCCAGACACGCCAGGCCCAGGGTTCCTACGATGACAGTTACCTTGgTTATTCTGTGGCAGTGGGGGAGTTCACTGGAGATGCAGTTGAAGATTTCGTGGCAGGGGTCCCCAAAGGAGCCTTGGTATACGGCTATGTGGCTATATTTAGCGGGAGTGACCTGAAATCTTCAATGAACTTTACTGGAGAGCAGATGGGATCCTATTTTGGCTACGCGGTGGCAGCCACTGACATCAACAATGATGGGCTGGATGACCTGTTGGTGGGGGCGCCCATGTTCATGGTGAGAGACTCGGGCGGCCGGCTGGAGGAGGTGGGCCGGGTCTATGTCTACCTGCAGACCGCGCCCCTAGACCtcaaccccaccccccaggtGCTGAAGGGGACCCAGGTGTTCAGCCGTTTTGGGAGCTCCATCGCCCCCCTGGGAGACCTCAACCAGGATAGCTTTAATGATGTGGCAGTGGGCTGTCCTTTTGGAGGGGAAGACCAGCAGGGATTGGTATACATCTATAATGGACAGGCCAACGGGCTCAGGGATGAACCCTCCCAGGTGCTCAAGGGCCAATGGGCTGCCGGCAGTCTGCCCTCCAGCTTTGGCTACGCCATTCGGGGCAGCAAAGACCTGGACGAAAATGGATACCCAGATCTCATTGTTGGGGCGTTTGGAGTGGACAAGGCCCTGCTTTACAGAGCCCGGCCCATCGTCAACGCCAGCGCGTCCCTGCTTGTCTCGCCCACCATGATCAACCCGGAGGAGAAGGCCTGCACGGTGCCCGCCGACAACGGGGCCTCCAGCATCGCCGTCTCCTGTGTCAACCTCAGTTTCTGCCTTGATGCCAGCGGGAAGCACCTACCGGATATCCTAGAGTTCCTGGTGGAAGTGCAGCTGGACCGTCTGAAGCAGAAAGGAGCCATCAAGAGGGCACTGTTCATCGACACCCAGCAGCCCACCATGAAGAAGACCTTGCTTGTGCGGAACGGCGCCCGCAACTGCAGCGACACCCAGATCTACCTGCGGGGGGAAAATGATTTCAGAGACAAGCTGTCAGCCATCTACATTGGCCTGAACTTCAGCCTGGACCCCCATGCCCCTGCAGACAAGCATGGCCTGAGGCCCATTGTCAACTACCAGACCACAGAGCTCATCGAGCAGAAGGCACATATTCAGCTGGACTGTGGAGAGGACAACATCTGTGTCCCAGACCTGAAGCTGGCTGTGCGTGGCGACAAGTCGGACGTCTTCCTGGGCGATGACAACGCGCTCACCTTGACCTTCAACGCACGCAATGAGGGGGAGGGCGGCGCTTACGAGGCTGAGCTCTACGCCTTCCTACCCCCGGAGGCGGACTACAGCGGGATCGTGCGCAACAACGAGAGCCTGTCTCAGCTGACCTGCAGCTACGTGGTAGAGAACCAGACCCGGGTAGTGGTCTGTGACCTGGGGAATCCCATGAAGTCCGGGACCAATCTCTGGGGTGGTCTGCGCTTCACCGTGCCCCATCTGAAAGACAATCGCCAGTCTGTGCAGTTCGACTTCCAGATCCGGAGTAAAAATGAGAATAACTCTCGCAGTGAGGTTATGGCCTACAAGCTGGATGTGGCGGTGCGGGCGGACGTCATCTTACAGGGAGTATCTCACCCAGACAAGATCCTGTTTCCTCTGGCCAACTGGAAGTCGACTAAGCAGCCAGTGACTGAGCAGGATGTGGGGCCTGAAGTCAAACACGTGTACGAGctACTGAATTATGGCCCCAGTTTGATTAGCCACACCCTCCTGGAGCTGCACTGTCCAATGAAAATCCAGAACCATCAGCTGATGTACCCAGTGGAGGTTGTGACCCAGGGCCCCTTGAACTGCACGACCAACACCACCATCAACACTCTGCAGCTCAAGCTGCAGCAGTCGCCCACAGAGCAGCCTCACGCCCAGACCCCACACCTGGACCACCACATGCAGAAGAGGGACACTTCCCGAGACCCCCTGTCTGAGCTGAGCACCCTGAGCTGCGGGCAGGTGGAGTGCTGGAAGCTGCGCTGTGAGGTGGGGCTGCTGGAGAGAGGCACTAGCGCCATCCTGGAAGTGCGCTCCCGAGTGTGGGCAGACACCTTCATACAGagaTCCTACCCCTATGTGCTGGAGTGCACTGCCACCTACAAGGTGCAGAAGATGCCCTACGAGATCCTGCCCCGAGAGAAGCCCACCGGAAGCAAACAGGCAGGTTCCCTCCCTCACACTCCTGCTAGTTCACTGCCAGCATCTGCAGGCACTGTCAGCACACACGTGATCTGGAACAAGCCCGAGAACCCGTATGCTGTGCCTCTGTGGATCATCATCCTGGCGATTCTAGCTGGCCTCTTGCTACTAGCCCTGCTCATCTACGTGCTGTATAAACTTGGCTTCTTCAAACGATCCCTACCCTACGGCACTGCGATGGAGAAGGCGCAACTCAAGCCCCAGGCTGCATCAGAGGCCTAAAACCGAAGCGGGCCCCAAATAacgcaaaataacaaaaccaaaacgaGTTACCCACAAGATTGCCATGGAATCCAAAGACTGTAAAGGAAGACTGCAGTTTAGATGTAGGAGGAAGACCACTGGAACTCCACTTTGctgcactaaaaaaaaaatgaatcaaaaccaaatgaatgtttataatttaaatttattttataggaGGGGGTTGGGGTGGGCTACTGGGAGCCTTCTTCAAGAGGAAATGCAGGATAGTACAAAACCTCACAACAGCCTCACGGTGGATGTGACGTTCAGATCGAAACAGGCACCGTTTACGAACTATTTTCCAAAACGCCACCGATTGGCTTAGCGATCTCTGGACTCACTTTTGTTTGTGGAAGACGGTTATCCTCAGCCTACACTTGAGATACATGCATTCCTGTGTCAGGGAattggtttgattttaattgtcatttgggggggagggggttgttttatttttatttctcttggtGCTAGAATCGGTCGCAGAGCATATTCCAGCAAAGGAGGGTGGATTTTGCTCCTTTTGCCAAAGAATCAAAAGGTCTACAAACGGACATCGGGGAGAGAATTATCAATTAGTAGGAAGAAGATGGGAAAACATAACGTCCAGGGCTGTGATTTTGCATTGCCAATATTCCTCTGGTCTATGGACTGAAACACCAGGTTTATCTCCTACTCCTACGCTGggactgattttattttatttatttttcccccttacATTAGTCCAACACTTGGATTGTTCAGCTAAGTGCATTTcttgctttttctaattttgtCTTGCAGAAGTCTGGCTAAGTCTCTAAGGAGTGGGGACTTCCAGACACAGGGCTTGTATGATTTAAGACTGCAGCCAAAACACGCGTATATGAATACTAACCAGCTGGAGATGGAACCCAggagcacattttattttcttcaggttcttttaattattttttcatagtcGGGCTCATATTGGTGCCACTTAAGAATGACACTGTTGCGGGTTCTGTTTGCACTCAAGCCACTAGGATCCTCTGATCTCTATCAACATTAACCCAAGCAGACTGGGTCCGTGGTCCTCTGTGGAAGCTGTCTAGCACCCCCCGACAGTTCTGTTACCCCACGGGAGTTTTTCATCCATCTAGTGTGTCATTCAGATTCGTATTGCTCCAATATATTGCCGCTCTTTTGAAGGTGGAGAGAGACCGGTAGTACAGCAGCCTCTCCACATGCACAAGGACATCGAATCTGGACTTGGCAAATGTTGTCATTGCATTAATAGGGCGACCGTAAGATTCCTGTGTCGTCTGAGGTCATGGCaaagttttgtttgcttttctcctGTAGTAAAGCAACAGTTATTTCACTCCTTGGACTGGTGAAAGGTCAGTCTTAAGACTTGTGTGCTAGTAAATTATAGCTACCCTCCCCCCAAAGAGTGAAATATCAGAATACAACCATGATTCTTAACCCTAGTCTTCtggaacaaaaagcagatgACCCAAGTGTCCTTCAGGCCTAGAGCTGAAAATCAGTGGAatagaaaggaaacaaagtgaGATGTTCAAAACAGCAGACATGTGGGAAATGTTGGGAGTGCTAAGAGCTTGAAAATCAGTCTCGCTAAACTGTTCCAAGAAGATGgcacaaattgaaaataagttCAGCTTCTTGCTTACTTTAATTACTGAGAGCAGGGGGGAGAGTGGGACAAACTCTGAATACTGAACAGAGACCAGACGTTCCTCTGAAACTGGAGAGGAAACTAACCAGGGCAGTGTGCAGATTGAGGGGGGCCTTCCAAAGGGGTCAAAGGTGGGGGTTTAAGGTCAAAGGTCGGCAGAACAACTGCATTTTCCTCAAGGGTCCACCCGCACTGACTGTCAAGAAACCAAAGACAATCTGAACTAGCCACTCACAGGTGCAACTTCATCCAGGAAGTGAAGAAATATGTTTTGGGCtttggtctgttttttgtttttttgtttttgtttttacataatattaacttaatCTGGAGGGTTCCTAATACCGGGGGGGTCATCCTTTTGACCACAGTTTGCGCTGAGCTGCACAGGATGGACAGCATCTTGTCTGATCTCTACACCCCAAAAACGCAGCATTTTATACACCGTTTTGTAGGTATGACCAAGAAACGTACTCctttaatctttcattactggaCTGACTTGATCCGTTTCTTTAACCACTTATCAACTCTGTAATCGGTTATCACAGTATGACGGTAAGCTGATGCAATCATTTTCAGTCCTTGGCTGGGATTGAATGACGAGAACTTTGATCCCCCCTTTAATTGCTACATTACAAACCTGCCCTTTTACTTTTGCCAGAAGCTTGCTGCTTCTACTCATTAACCAATGAAAATGGCCATCCGGTGCTGGGCTATAATTTGTCTCTAGTCTTGGCCCTGGTCTCTTTAGCTTTTCCGTCACCATGGAAGAGATCCTAACGAGGAAGGTGTGTGTAGTAACTGCACAACATCAAGCCCAGTCTTAACAATTGGTTTGTGTCCAGCctgtgtggtggtgttttctgtgggggtgggtgggggagcCTGCAGGGTGGGCTTTGAGAAGGCAGGTTTACACTGTATGTGCAGAACTGGGATGCTGGGAGAGAAATCGATGCCTTGGAGCCACAAGGCGGAGATATTAAGGGACCAGCCAGGTTATTAGGAACACTCCTACCATGTGTTGTAAgtgcaatatgttttatatctCGCGTTTCATTCTTCCTTAGGTGTAGATCAGTAGGGCTGACCCAAAATGTGctaattttttttctcactgCTTATCAAGtccttttataaatgaagaaacGCTTATTTGTTCCTTTTACCGATGGTCCAATCTGAATTATGAATGTAattagtgcaatatgcataatgagtgcatgtgtctgtatagataaacctatatatacacacatacattccaGTTTATCTGTAAAAAATCTCTACAAACACCCCTGCAGTTTAAGAGCTTAGATAGGTCTGTGCATTAGTTATAAATTGTCCTATAAGGGATACACCAGGGAATGGTAGACGTTGGCTTGAATCGCATGATGTCTGAACAAGAAAAATGATTGTGACAACTGGGATCCATTTAAAcgtttaatttgtaaaaatatatcattCCTGTTTGTGCTTGCCTTAAGCAGCTGTTAATGTAACTGGCAATAAAAGCATAACAACACTAATGTGAGTAAAGagacacaaataacaaaattcTATTATAAAACCatatacgtgtatatatattttttcaattggataaaatatttcaaatcatgCAGCACAGCAAACGGCCATAGTGGGTAAGTTGTTTTCATTAAAGTTTTCAAATTTAAGTCTTTAGTATTACACACAGGGGCTGCCAGTTCGGTAGTGTCTATTTCTGTTCTCTCTGGGTCTTTTtgaagttttaatttagatgtatttGAGGGAAAAAATCCTAATTGAATCATGCTTACCAGGAACATGAGCGATTCACCCTAGTTATGTATATTCTGATTTAACCCTAGGAggatattttctgtttgtaggaaaatgtaaaacctatatattttaattttttatttaaattttttttagaGACTCCAAATTAAGCCACTGCAAAACATGgtaaagaaacattttggaGAAGGAATTGTGTTTGCAGAAGcatgtgattgtttttaatgctaaCTGGATTCATTCTCCAAGTATGTCTTTCTTGGTTCTTTCAGTTGTATATCGTTGTACTGAATGAAAGCAGGAGAATTCCTGCTAATTGATTTTGTTGACCACAGACCCTGAAAGACATCTGTTTGGGAGTGGACATTGAAAGAAAGCTGATTTCCATTATTACATTTGCTCTGCTgctcattttgaaaacttgatgTATGAACCAATTGCACCGGGTCAGtcctgctttttgttgttgttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttttctttttttttcccaagcaTTTTCTAGTTGTAAATATGTCAGCGAAGGAGAATATTTGAAGCTCGCCTTCAATGAAAATACTCTGGATTGTGGTGGATTTTTCTCTTCCCCATATTGGGggaaattttgtattttttattttaatattgtaattttgtttatggTTGTATTTTACggtttgcaatttaaataaaattccaGTTTGTacaaaaaa

Function

GO: NA

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008715 True 7249 mRNA 0.47 30 9488495 9525687

Neighbor

gene id symbol gene type direction distance location
AMCG00008711 NA coding upstream 79737 9400486 ~ 9408758 (+)
AMCG00008712 NA coding upstream 96739 9389411 ~ 9391756 (+)
AMCG00008708 NA coding upstream 137978 9338831 ~ 9350517 (+)
AMCG00008706 NA coding upstream 178896 9290688 ~ 9309599 (+)
AMCG00008700 NA coding upstream 205888 9270362 ~ 9282607 (+)
AMCG00008716 NA coding downstream 2211 9527898 ~ 9529672 (+)
AMCG00008714 NA coding downstream 6104 9531791 ~ 9537457 (+)
AMCG00008720 NA coding downstream 95422 9621109 ~ 9639246 (+)
AMCG00008722 NA coding downstream 166404 9692091 ~ 9695072 (+)
AMCG00008721 LOC106566152 coding downstream 178895 9704582 ~ 9735738 (+)
G51000 NA non-coding upstream 90126 9392027 ~ 9398369 (+)
G50983 NA non-coding upstream 134090 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 293857 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 294810 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 295576 9192530 ~ 9192919 (+)
G51065 NA non-coding downstream 115069 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 266451 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 447609 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 453711 9979398 ~ 10071199 (+)
G51157 NA non-coding downstream 694546 10220233 ~ 10222915 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 108916 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 172344 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 365683 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 400528 9081827 ~ 9087967 (+)
G50747 NA other upstream 821947 8450166 ~ 8666548 (+)
AMCG00008725 NA other downstream 389807 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 401700 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1166690 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 1302881 10828568 ~ 10846436 (+)
G51297 NA other downstream 1459203 10984890 ~ 11040674 (+)

Expression


Co-expression Network