AMCG00008718 (bloc1s1,LOC107573571)


Basic Information

Item Value
gene id AMCG00008718
gene name bloc1s1,LOC107573571
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9579389 ~ 9587169 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008718
ATGCTTTCTCGCTTGCTTAAAGAACATCAAGCGAAGCAGAATGAGAGGAAAGAGCTACAAGAGAGGCGCAGGCGAGAAGCGATTGCAGCGGCCACCTGTTTAACAGAAGCCCTGGTTGACCACCTCAACGTCGGGGTGGCCCAGGCCTACGTGAACCAGCGCAAACTGGACCATGAAGTGAAAACGCTGCAGATCCAGGCCAGTCAGTTCGCAAAGCAGACGGCCCAGTGGATCATGAAGTGTGCTAAAATCAGTCTGTGCACAGTGTCCCTAATAAATATTTGCTGTCTTCTGCAGGAAATCGGCGACGTGGAGAACTGGGCACGCAGTATTGAGATGGACATGCGGACCATTGCCACCGCGCTGGAGTATGTGCACAAGGGCCAGCTGCAGCCCGCCTCctcctga

Function

symbol description
bloc1s1 Acts upstream of or within pigment granule organization; surfactant homeostasis; and swim bladder development. Predicted to be located in mitochondrial intermembrane space. Predicted to be part of BLOC-1 complex. Is expressed in brain; gut; inner ear; pneumatic duct; and swim bladder. Used to study Hermansky-Pudlak syndrome. Orthologous to human BLOC1S1 (biogenesis of lysosomal organelles complex 1 subunit 1).

NR:

description
PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1

GO: NA

KEGG:

id description
K20185 BLOC1S1; biogenesis of lysosome-related organelles complex 1 subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008718 True 408 mRNA 0.54 4 9579389 9587169

Neighbor

gene id symbol gene type direction distance location
AMCG00008719 NA coding downstream 14218 9562900 ~ 9565171 (-)
AMCG00008717 NA coding downstream 24455 9531833 ~ 9554934 (-)
AMCG00008713 NA coding downstream 161498 9413698 ~ 9417891 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding downstream 252670 9321577 ~ 9326719 (-)
AMCG00008703 NA coding downstream 291702 9283550 ~ 9287687 (-)
AMCG00008723 NA coding upstream 153115 9740284 ~ 9757947 (-)
AMCG00008724 NA coding upstream 178554 9765723 ~ 9794180 (-)
AMCG00008728 NA coding upstream 329016 9916185 ~ 9916748 (-)
AMCG00008729 NA coding upstream 330032 9917201 ~ 9920176 (-)
AMCG00008733 cers5,LOC107566328 coding upstream 346889 9934058 ~ 9948099 (-)
G51057 NA non-coding downstream 1006 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 53702 9521354 ~ 9525687 (-)
G51015 NA non-coding downstream 168415 9409759 ~ 9410974 (-)
G51007 csrnp2,LOC106567166,LOC107594006,LOC107715040 non-coding downstream 189228 9389784 ~ 9390161 (-)
G51006 NA non-coding downstream 189819 9389211 ~ 9389570 (-)
G51081 NA non-coding upstream 151477 9738646 ~ 9739256 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding upstream 322442 9909611 ~ 9910800 (-)
G51120 NA non-coding upstream 340076 9927245 ~ 9931102 (-)
G51243 NA non-coding upstream 1081542 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 1213939 10801108 ~ 10803709 (-)
G51008 NA other downstream 186162 9390843 ~ 9393227 (-)
G50788 NA other downstream 919372 8656728 ~ 8660017 (-)
G50739 NA other downstream 1208059 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1285035 8270324 ~ 8294354 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 751156 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 973697 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 1083780 10670949 ~ 10718201 (-)
G51241 NA other upstream 1088587 10675756 ~ 10712485 (-)
G51250 NA other upstream 1210463 10797632 ~ 10799154 (-)

Expression


Co-expression Network