AMCG00008720


Basic Information

Item Value
gene id AMCG00008720
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9621109 ~ 9639246 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008720
ATGTCCACAGTGAGCGCTAATCGGGAGAGCAAGGAGAATCAATGGCTCGGGGTGACAGTCAAGAGCCAGGGCGTTGGAGGAAAAGTGGTGACATGCGCCCACCTGTACGAGTTGCGGCAGCGCGTGAAGCAACCCTCGGAGACGCGGGACCCCATTGGGCGCTGTTACGTGCTCAGCGAGGACCTGACAGAGCGGGACGACCTGGACGGCGGGGAGTGGAAATTCTGTGAGGGGCGGCCGCAGGGGCATGAGCAGTTCGGCTACTGCCAGCAGGGCATCTCCGCCAGCTTCACCCCCGACAAGAGGTACATCCTCTTCGGGGCGCCGGGCACCTACAACTGGAAAGGTGAGCCTAGGGTCCAGCTCCTTGACCTGTCTGTGATTGACATTGGCTTCTATGACGACGGGCCCTACGAGGTGGCAGACGAACAGGAGAAGAATGACAAGCTGATCCCAGTGCCCTATAACAGCTACCTGGGGCTCCTGTTCATGACCAGCCCCGTCGAGGACACGCTGGTATACAAAACGTTGGAGCCGTCAGAGCGCGCCACCACCTTTGAGGACGTAGCTCAGAATAGCTACTTAGGATTTTCAATAGACTCTGCCAAGGGCATCATCAGCCAGAAGGAGCTGACTTTTGTGGCCGGGGCGCCCCGTGCCAACCACACGGGCGCCGTGGTCCTGCTGCACAAGGACAATGTGTACAGACTGGTACCTAAGCACATCCTGTGGGGCGAGGAGTTGGCATCTTCTTTTGGGTATTCTGTCGCTGCAGCTGACCTCAACAATGATGGTTGGGTGGACCTGTTAGTGGGGGCTCCTAATTTCTTTGACCGGAAGGAGGAGATCGGCGGCGCTGTGTACGTGTACCTCAACCCAAAGGGCCGCAAGGAGTGGGCCAAGCCTGTGCGGCTCAATGGCACCTATGACTCCATGTTCGGTCTGACGGTCAGCAGCGTGCTGGATGGGTTGGCTGTGGGGGTGCAGCGTTTCGGATACTCCATTTCGGGGGGTCTGGACATCGACGGGAACTCTTACCCCGACTTGGCAGTGGGCTCCCTCAATGATCAGGTGGTCCTGTACAGGTCTCGTCCAGTAATCAACATAGGCCGAACCGTCAAAATCACGCCCCAAAACATCGACCTGGAGCAACGCAACTGTCAGGGCCGTGATGGAGTGTGTGTGGACGTGAAGGCCTGCTTCAGTTACACTGCGCACCCCTCATCCTACAGACCCCATATCACTTTGGCAGTTCTGTTTGAGGCCGACACCGAGCGTAGGAAGTTGAGCCTCCCACATCGCGTCAACTTCCTGGGCCGGGTGGATAGAGAGCCAGAGTACCAGCACTCAGAGGAGGTGTTGCTCCAAGGGCAGCATCACGTCGCCTGCCAGACAGCCACCTTCCAGCTGCAGGACAACCTGCGAGACAAGCTGAGGCCTATATCAATCTCCGTCACCCACTCTGTGAAACGTGTGTGGCACTCCCATGTCCCTGCCAGCCAGCTAGGGGAGCTGTCTCCAGTACTGAGTCCTGCCATGCCCCCCACACTGCACGACGAGGTGAATTTCTTACGGCAGGGCTGTGGAGAAGACAAGATCTGCCAGAGCAACCTGCGGCTCCGCTATCGATTCGGGATCCGCCACCACGCTTCAGATCTCTTCACCCAGTTGCCCAAGGACATTGAAGGCACgcctgtcttctctctctcagaccagAAGGCTGTGACCTTGGAGGTTACCGTCACCAACCTGCCCTCTGACCCGCGCTACCCCCAGCAGGACGGAGACGATGCCCATGCTGCCCAGCTACTGGTGGCCGTGCCGGACACTCTGTCCTACTCCGGCTTCAGGGGCCCGCAGGACAAGCAGCTGGTGTGTCAGGCCAATCAGAACGGCTCCCTGGCAGAATGCGAACTGGGAAATCCACTCAAAAGAGGCTCCAAGctCACCTTCTATGTAATCCTGAGCACCTCTGGTATCACCATAGAAACCACCGACCTGTTTGTCAACCTATCACTGAACACTATCAGTGAACAGCTGGACCTGAAACCCATTGTGGCTCATGCCAAAGTTGTGATCgagctccctctctctgttgctGGGGTGGCTCGTCCTCACCAGCTCTTCTTCAGCGGGACAGTGAGAGGCGAGAGTGCGATGACATCACAGGAGGACATGGGCAGTTTGGTGGAGTACGAGTTCAcgGTGACCAATCCTGGGCAGTCCCTCCAGACACTAGGCTCCGCCTTCCTGAACGTCATGTGGCCCCACGAGCTAGCCAATGGGAAGTGGCTACTGTACCCCACAGCGATGGAGTTTAAAGGGCAGCCCAACACTCGCTGCACAACCTCCCAACCTCTCAACGTCCTGAACAAGAGTCCCGTCTACCAATCCCAGGCTTTACAGAACACGAATTCCCCAACCAGGAAGGTCCGGTCCCACccagaggaggaggacagggTCTTGACGCAAAGCATCATGGGTAGGACAACTCCAGCTGTGGCTGCCTCAGAAAGGAGGAAGTCTCTGGAGCTGGACTGCCAGCTGGGCTCTGCGCGCTGCATGCTGTTCCAGTGTCCCCTGCACAGCTTCTCCAGCTCGGCCGTGCTGAAGATCTGGGCCCGGCTGTGGAACAGCACCTTCCTGGAGGAGTTTCCCTCAGTCAGTGCCCTAGACTTGATAGTCAAGGCAAACATCACAGTCAAGTCCACCATTAAACACCTGGTGTTAAAGGATGCTGCTGCCAAGATCTCAGTGATGATATATCCAGAGCACGGGGTCTCCGATCAATACGGGATCCCCTGGTGGATCATCCTGATAGCCGTCCTGGCAGGGATCCTGGTCTTAGCCCTGCTGGTGTGTCTGCTGTGGAAGTGTGGGTTCTTCAGGCGAGCCCAGCACAAAGACACCGTTCCCCAGTACCATGCTGTGAAGATCCCCCGGCAGGACAGGCCGCAGTTCAAAGACGAGAAGACGGGCACCCTGCAGAAGAAGGAGTGGGCAACGCACTGGAGTGACGGGGCCTCCTGA

Function

GO: NA

KEGG:

id description
K06583 ITGA7; integrin alpha 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008720 True 3030 mRNA 0.58 23 9621109 9639246

Neighbor

gene id symbol gene type direction distance location
AMCG00008714 NA coding upstream 83652 9531791 ~ 9537457 (+)
AMCG00008716 NA coding upstream 91437 9527898 ~ 9529672 (+)
AMCG00008715 NA coding upstream 95422 9488495 ~ 9525687 (+)
AMCG00008711 NA coding upstream 212351 9400486 ~ 9408758 (+)
AMCG00008712 NA coding upstream 229353 9389411 ~ 9391756 (+)
AMCG00008722 NA coding downstream 52845 9692091 ~ 9695072 (+)
AMCG00008721 LOC106566152 coding downstream 65336 9704582 ~ 9735738 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding downstream 222573 9861819 ~ 9910773 (+)
AMCG00008736 NA coding downstream 578092 10217338 ~ 10219366 (+)
AMCG00008738 NA coding downstream 619200 10258446 ~ 10275211 (+)
G51000 NA non-coding upstream 222740 9392027 ~ 9398369 (+)
G50983 NA non-coding upstream 266704 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 426471 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 427424 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 428190 9192530 ~ 9192919 (+)
G51065 NA non-coding downstream 1510 9640756 ~ 9715167 (+)
G51094 NA non-coding downstream 152892 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 334050 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 340152 9979398 ~ 10071199 (+)
G51157 NA non-coding downstream 580987 10220233 ~ 10222915 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 241530 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 304958 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 498297 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 533142 9081827 ~ 9087967 (+)
G50747 NA other upstream 954561 8450166 ~ 8666548 (+)
AMCG00008725 NA other downstream 276248 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 288141 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 1053131 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 1189322 10828568 ~ 10846436 (+)
G51297 NA other downstream 1345644 10984890 ~ 11040674 (+)

Expression


Co-expression Network