AMCG00008721 (LOC106566152)


Basic Information

Item Value
gene id AMCG00008721
gene name LOC106566152
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9704582 ~ 9735738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008721
ATGCTGCACAGTGACAAGCTTCTGTCGACAGCTTCAGACCCCCTGCTGACTCCCATCGGCCCTGCGACGCACAGCGCTACAGCTGCATCTGCCAGTCTCATTCCTTTTGCCTGGCAGCTGCTCAACAATATGAGGGCAGAGGAGGGGATGCACCAACAGACAGGATGCCAGCTGTACCCAGAGTGTCCCAGGGAAGAGAGCGTGCCCAGCATCCTGCCCCCGCCCCACTCTCACCTGTCCTGGCCTGGCACCACCACGATGGAGACGGGCAGTCCACGCAAGATCCAATTCACCATGCCCCTCCTGGACTCCCATCTGGACCCAGAGGCTGCTGAGCAGATCAGAAGAAGGAGACCCACTCCTGCCACTTTGGTAGTGTCCAGTGATCAGTCCTCCCCAgAAATAGATGAAGACAGAATCCCAAATCAGTTATACAAGGCGGCCCTGATGAATTCGCCTCGGCAGCGAAGGAAGGGTGCTCGCGGCACCCCCACCATGAAAGAGCTACAGTTCCTGGTTGAGCACCACCTGTatcggcagcagcagcagcagcagcacggaGGGGACGAGTGCTCCTCTGAGAGCTGCCTGTCGGACCGGCCCAGCCCCGAGTGCGGCCAGGGCAGCACCGAGTTCCCAGAGGATGAGGGCGGCTGGGATGCAGAGGAACGGATCAGCCCGGAGAGTTTCGAGAAGCTGCGCAACCAGATGGAAGCCCCTCACAGCCAATCGGAGGCCAGTGGAGGGGCGGAGCTCCCGTCCAGTGTGTCACCAAatcaggagcaggaggagggggGTACCGCCACCATCACCACGGCAACACAACAGACACCAGCAGGAGGAACTAAAACAGACTGCCCAGTGTCTCtggaggaagagaaaaagaaggACACACaggagaaaggaaaataaactgccCCTGCATCAGCTTTCTGTTGTACCAAGAAGCAGAAGGAAGATGCACAATGAATGTTTTACAGACTTGGTTTCCGAGAAATTCACCGTTTATCTCCAACCacagcacccccctcccctaCCCCCCTCTAGTATTTTCCTgtggctggaaaaaaaaagcccccCAGCTTTGACTCCTGGATCATTTAAGAACCACGCAGAGAATGAATGtgaagcacttttttttccttccttttaaaaaaatgtaatcttggAAAAATGTTCATTATTAACTATAGCTCTATAAATTTAGCAGATTATgagtttaaaaatgacaaaacttAAATAACACAGGAGTTCTTGACGGTCGTGTTTCAAAATCAGCCTcactactttatttttgttatcaGCAATGGATGTGTCCACATTTGTCTTCAAGGAAATGGAGGATGCTCTGAACCTGCTCTGAGCAAACATGATGTCATctatcacttaaaaaataacagaagagttataatgtataatgataATACATATTATGAATGATATATTAGGctgtaaaaacaatattcagGAATGCTTTGCAATAAACACTAGGGAAGCCCGATATGCATGACAAATAAAGGATAgatcaaataataatgatctagACATAAACCTTCAACACACAGATTATAAATAGACTGAAGTGCCTCTTTGCTACAGTCTGTACACACTGAGCAGCTCTCCTGCCAATGGAAGTTGCTCGTCCAACAGCCCGATCAACACATTCATGCAGCTCCAAGCGACAGAGACTGTCCCCCCGATTCCAATAGTCTCACCGGGGCCCTACCAATAGTGCCCTCTTGCAAAAGCTTATGATACCCCATCTGAATCCCATGAAGTGCCTGGTGAAATGCTGAGTACTGTTCAGACCTGGCTCTTACAGTTGATGTCTCCCAGCTAATCAGAAACGACTGAAGGCATCTTTCACAGCAGGGCCAATTCCATCATTAAAGTGCTGACTGGGATCAGAGTCCAGCAGTGGGACAAATAGGAGCCAAGATTGACGAGCCCTGGAGGGAGGCAGGGTTTGACTTGGAGATGCAGTGGTAGATCTACCAAGCACTGGTGAAGACAAATGTggaaatcctttttttctttttacatatttatgttgATTAATTAAACTCCAAGTAATACCACTTTCTCTGCCTCTTGTGCGGGGTCCAGCTTTTCTTCACATGCAGTCGCTATGACGGTTCACAGCAGAGCAATAATCCTAATGcaaaatatacagatatacaaGCTTATATGCAGGAATGCTGTTGCACTACAGCAGCAAATGTGAATTCAATTAGGGGTGGATTACTGCAGAGCAATGCCTGCTCAGTAAAGCTACATTTTACTGTATAGTCTATTGCTTGAATATGCTCCGTGCCATTTCCAAGCGCACACAGGTTTATAGTGGAAAGACGAACAATGCTGTGCCCGTGGGGGAGGGTTAATCTGGTAAAAGCCTCTGTACAGAGATCTGGTGTGCCTTACAGCCTTTAGCAACTTCACCAGTGTGAAGACGTTGGTAGTCTCAGATGTGGTGCTAACTGGCAAGCTCACAAGAACAGTTGTCTGGGGGATTCATTTTTTGTCTATGTAAACAAAACCAGCGATCTCCAGACTATATGGTCCAACCTGCCCTCTGATTAGAAACCTCGATTGACCACCCCCCAAAGTCCTCGCATTGCTTTACCTGCTTTCACCATAAACCTGAGTTTATTTGAGAGCGCatctctgtttttttaatgggatACTGTGCAGACAAAGATCACAGTTCTTCTCGGATCACTCTTTAACAGCAGGAATccgggggaaaataaaaaaacacaactgtaaaATAGCCATAGTGACCTCTTGCAGGTTGATTAAACGCCAGCAAGAACAGGGAACAGGGTGTTTCTCTGTGTCGATTTCTAATTACTGACTTTTCAGTGTCTTCGTTTTGTATATCCTTCTGCCTGTATATCTAAAACCTAATGTTTTGAATCATGACATTTAGAAAGTCAAGTGTAGAAGAGGAATAGGggggaaacagaaaataaatccccAACACTTCACTTGGTCAGCCAGTTGACTAACATTGATTGCATGATTTTATAATGCCTTCTCCTTTCAAAAAATAATCGCTCAGAGCACTTAATTTAAAGTAAACTTGGATTTCCACTAAAGTGTTCTGTTTACCAGCGCAATATGTGTTTCTGCTCCTTTTACCATTTAAAGAAAGTGCTCCAAAATGTCTTgagttgaaaaaataaaaaacacttgatTGTCAGCAATCGAGTTAACCGTGGTAGCTTTCTctgcaaatatatttctttctcaTTTAGATCACAGATTCAGTCATCCTATCAGAGGTTTAGACTGGCTAGCCCCTTAAACCACATCCCAGTGCAGGCTTAGGGACCATCACAGTGAGCCATCATTACCAACAGAAAACCCAGGGAGGAAGGCCAGGTAAGAAAGTTTTAGTATTAGTCCCTTAGTGAGGACTAGCCTCTCCAGATCTTTAAGAATCCACTTCTAGTGAACGCTAGGTTCCCTGTCATCGTTGACTGCACAAAGCATCGGAGTGTAGAGGGAGAGCtctcaaattaattttgatatCTAGGGCTCTGTACTGAAGTTCCCAATTCGGCAGGGCAGTGTCTATATGGATCATagagtaaaatgtatttcaaatatatcccatttatttcaaatatactaAAAGGGGGGCAATTTGGCATATAAAATAGAAGGATCAGGCATTTATGTGATATATTAAAAGATATACGTTTGTGGAATGTTAAGCTTCCACTTTAAACCATTTGGTAAACTGAAAAAGCCTTTAGACCGCCTTGATGCTTCACTACAGCCCACAGATATCCGTCAAGATTGAAATGACCAGCAGAAGAAAGGAAATTGgggcaatcaaaacaaatagatCTGGAAAAGCAACACTGTGACAATAAAATGactcccccccctccctgccaTAAAGTTTAATAatggcaacattttattttacactcgGCAGAACAAACACTGCTTTTACTCAGATCACTATTACAAGAGATTGAGTTATCCCTGACAGCAAACGTATGTATCTTGTTTGctctgttttagttttagtgcaggactgcttttttttttttttttttttatgatttccaGCATGACAGAAATACATGCGTGTTGTAATTCTtgggttttgtgtttatttagttcttgttttttttctttcgtgCAGATGGGGCAAAACCCTTCATTTATATGGCGGTTTATCAACTTTAAGCAGAAGGAGTTTTTACTGTGTCAGGAGCACATAGGACATCCCTGTAATAGATGAtagcaaagaaaatgtttgtatgAATTTCTGTATATGTATTACTATAGATACTGTCCAATGATAAAcatctgtataaaaaaaagtgttctttTATGAtgaagattgttttaaaagaaatacaaaccttaATATCTGTCA

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 1A-like isoform X3

GO: NA

KEGG:

id description
K08050 PPP1R1A; protein phosphatase 1 regulatory subunit 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008721 True 4396 mRNA 0.44 10 9704582 9735738

Neighbor

gene id symbol gene type direction distance location
AMCG00008722 NA coding upstream 9510 9692091 ~ 9695072 (+)
AMCG00008720 NA coding upstream 65336 9621109 ~ 9639246 (+)
AMCG00008714 NA coding upstream 167125 9531791 ~ 9537457 (+)
AMCG00008716 NA coding upstream 174910 9527898 ~ 9529672 (+)
AMCG00008715 NA coding upstream 178895 9488495 ~ 9525687 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding downstream 126081 9861819 ~ 9910773 (+)
AMCG00008736 NA coding downstream 481600 10217338 ~ 10219366 (+)
AMCG00008738 NA coding downstream 522708 10258446 ~ 10275211 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding downstream 541212 10276950 ~ 10285158 (+)
AMCG00008742 LOC107709223 coding downstream 575844 10311582 ~ 10312097 (+)
G51000 NA non-coding upstream 306213 9392027 ~ 9398369 (+)
G50983 NA non-coding upstream 350177 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 509944 9194404 ~ 9194638 (+)
G50931 NA non-coding upstream 510897 9193015 ~ 9193685 (+)
G50930 NA non-coding upstream 511663 9192530 ~ 9192919 (+)
G51094 NA non-coding downstream 56400 9792138 ~ 9794219 (+)
G51129 NA non-coding downstream 237558 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 243660 9979398 ~ 10071199 (+)
G51157 NA non-coding downstream 484495 10220233 ~ 10222915 (+)
G51168 slc48a1,LOC106567162,LOC106572510,LOC105022284 non-coding downstream 539443 10275181 ~ 10281982 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 325003 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 388431 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 581770 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 616615 9081827 ~ 9087967 (+)
G50747 NA other upstream 1038034 8450166 ~ 8666548 (+)
AMCG00008725 NA other downstream 179756 9915494 ~ 9937752 (+)
AMCG00008727 NA other downstream 191649 9927387 ~ 9931515 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 956639 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 1092830 10828568 ~ 10846436 (+)
G51297 NA other downstream 1249152 10984890 ~ 11040674 (+)

Expression


Co-expression Network