AMCG00008723


Basic Information

Item Value
gene id AMCG00008723
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9740284 ~ 9757947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008723
CTTTTCTCCcccccctgtctgtctgtctctctctctctctctctctctctctctccgtctccttCTCGTCTGTGCGGCTCCATCTCTCACACATTCTCGCACTCGGGACGCACACCATTTCCTCTCAGCTCTGATGGCTGAGCTTGTGAGAGTTCGCAAGAAACACCTCCAGACTCCCATCTGCAGattACGGTGCATGGTGAAGCAGCTGGATGAAAAAGATGTTGACTTTGAAGATCTGAAGAAGAACCTGGATTACACTGCATCTCTCCTAGAAGCTGTTTACATTGACGAGACCAGACAGATGCTAGATATGGAAGATGACCTGCACCAGATCCGCTCGGAGTCCGTCCCCACAGAGGTCCGTGATTGGCTGGCCTCGACCTTCACCCAAAAGGCCCGCCCACCTGCCCGGCGGTCAGATGAGAAACCCAAATTCCGCAGTATCGTCCACGCGGTGCAGGCTGGCATCTTTGTGGAGAGGATGTTCAGAAAAGCCTACACTGCAGCCATTCCCAACCAGCCTTCTGCCGTCATTCAATGCCTCCGGAACATCGACCGGTGGAACTTCGATGTGTACGCACTGAACGCCGCCAGCAAGGGGCACACGCTGCAGACCATCGTCTTTGAGCTGCTCACCAGATACGAGCTCAACACCCGCTTTAAGaTCCCTATCGCATTCCTGATGTCCTTCCTCGGAAACCTGGAGAAAGGCTACAGCAAACACCGCAACCCCTACCACGGCCAGGTCCACGCTGCAGACGTCACACAGACCGTCCACTGCCTGCTATTACGCACTGGCCTGGTGCACTGGCTCAGCGAGCTGGAGGTCCTGGCTGTGCTGTTTGCCGCCGCCATCCACGATTACGAACACACCGGGACCACCAACAACTTTCACATCCACACAAGGTCCGACTACGCCATGATCTACAACGACCGCTCCGTCATGGAGAGCCACCACGTCAGCGCCGCCTTCCGCCTGCTGCAGGAAGACCACATGAACATCTTCATCAACCTCTCCCGGGAAGAATGGGTGGAGCTGCGTGCGTTGGTGATAGAGATGGTGTTGGCCACAGACATGTCCTCCCACCTCCTACAGGTCAAGGCCATGAAGTTGTGTCTACAGCAGCAGGAGAGGATAGATAAAGCCAAGGCGCTGTCTCTTCTGCTCCACACGGCCGACATCAGTCACCCCACCAAGCCTTGGCCGCTGCATGCCCGCTGGACCAATGAAAAACAGGCCCTGTACGTGCAGGAGAAACGGTCCAGACGCCAGCGTCTTTTCCTTATGACTCAGAGCAACCCCTGCTGTAGTTCAGCAAGTCCTAAGAGGCTATGTACTGGGGACAAGGAGGCTGAACTGGGCcttcctttctctcccctctgcGATCGAAAGACAACTTTGGTGGCCGAGTCCCAAATAGGTTTTATCGATTTTATCGTGGACCCAATCTTCTCCTTACTGACTGAAATGGCTGAAAAGATTGTGATCCCATTGGTCCAGGAGAATCCTGCCCAGCCTGACCCCTGCCAGAGATACAGTTCGCTGTGGAAGGAGAGCTCCCGCGGCCTGCAGTGGAGTCTTGCCCACGTCACGGCCGAGCTGGTGAGCTTCCGATCGACGTGGACTCGACACACGGAGGACAACAAGTTCAAATGGAAAGAGCGGGCAGCCAACGGATCAGCAGACCAGAGCTCCATAGAAGAACTCTCTCCCAGTGAGGAAGACTTCTCCGAGGAAGATCCCACAGAGAGCTACTGCGAAGACTAGCATGGCAGACATCCTTGGATACAGACAGCCAGCTTGACATTAAACAGCCTGTCACTCTCTTTTTACATCAGACTGGGGTCTATGAGCCAATCCGGACTGAAACTCGCCCTTGCGCTGTCAAGAGGACGACTCCCTCGAGCCAATCTGGttagggaaaaacaaaaacaacagtagGGATCGAGGTCATTAAGCCGTGACTGAGGTGTCACACTCTTGTGGTACAGATGCGTGACTAAGAAATGTGCGGTTGTTTAGGGGTGATGCATGGGATGAAATTActgttaaaaaagtaaaaagggcCGGGGGGGATTCACTAAGCCATTTATGTATACATTCCACATTTTCATAGCATAACACTTCATCCACTCCAGTTAAGGAGGTGATTTTAAAGGGCTATTTGATATCTGCTGGATTTGTGCTTTGCTTTGAGCAAGAACCTACATGGATTTGATTTCTCCCACTTTTCTGTACGCCAAACCCTGTGGCGGATGTATACATCCCTCAGCCGGTCAGTTGGTCAGTCAGttgtcagtacagtacagccagCTGAGCAAATCTCCGGTCACGCATTATGATGCACTACACATGATGAATCACTGCTGTAAGAGCTGACTTGCATCCGGTGTAGAGGGCGCCTGATTAATAATATCCTGCATGAACAAAATTATGTGATGTCCCTGTTCAACCACAATAAGTGGTTAACATTAACCATGATCCTCACCCACATCACCCACTATCAAATTCACCAGCTTTGGACACCTCGGTGTATCATTTCTTAActcatttctattttatatgaatgtacaGGGAATTTGAAAGGGGTTGGGTTTTGTGTGTGGCTGTtacatgtgtaatatatatatatatatatacagtcagggaaaaaagtatttgatc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008723 True 2668 mRNA 0.51 15 9740284 9757947

Neighbor

gene id symbol gene type direction distance location
AMCG00008718 bloc1s1,LOC107573571 coding downstream 153115 9579389 ~ 9587169 (-)
AMCG00008719 NA coding downstream 175113 9562900 ~ 9565171 (-)
AMCG00008717 NA coding downstream 185350 9531833 ~ 9554934 (-)
AMCG00008713 NA coding downstream 322393 9413698 ~ 9417891 (-)
AMCG00008709 dazap2,LOC106572518,LOC106567170 coding downstream 413565 9321577 ~ 9326719 (-)
AMCG00008724 NA coding upstream 7776 9765723 ~ 9794180 (-)
AMCG00008728 NA coding upstream 158238 9916185 ~ 9916748 (-)
AMCG00008729 NA coding upstream 159254 9917201 ~ 9920176 (-)
AMCG00008733 cers5,LOC107566328 coding upstream 176111 9934058 ~ 9948099 (-)
AMCG00008735 NA coding upstream 193137 9951084 ~ 9965152 (-)
G51081 NA non-coding downstream 1028 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 161901 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 214597 9521354 ~ 9525687 (-)
G51015 NA non-coding downstream 329310 9409759 ~ 9410974 (-)
G51007 csrnp2,LOC106567166,LOC107594006,LOC107715040 non-coding downstream 350123 9389784 ~ 9390161 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding upstream 151664 9909611 ~ 9910800 (-)
G51120 NA non-coding upstream 169298 9927245 ~ 9931102 (-)
G51243 NA non-coding upstream 910764 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 1043161 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 1081159 10839106 ~ 10839672 (-)
G51008 NA other downstream 347057 9390843 ~ 9393227 (-)
G50788 NA other downstream 1080267 8656728 ~ 8660017 (-)
G50739 NA other downstream 1368954 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1445930 8270324 ~ 8294354 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 580378 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 802919 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 913002 10670949 ~ 10718201 (-)
G51241 NA other upstream 917809 10675756 ~ 10712485 (-)
G51250 NA other upstream 1039685 10797632 ~ 10799154 (-)

Expression


Co-expression Network