AMCG00008725


Basic Information

Item Value
gene id AMCG00008725
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9915494 ~ 9937752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008725
TATGATGGCAAAAACAATTTTTATTGTAATAGTTAACATAAAAAGTGCTTACtccttttaagaaaacaaagaaaggtaCAACTGGCATGCATTCATTCAGCGTCCCGATTTGTTCCACCCAAGAGAGGTTTCTCCAATAAACATTGTTACTTAATTCAGGGTTATTCAAAGGCTTACAGACAGCATCCAGGTGTTTGTAGGACAAAGATGTCTGGACTACAATGGACACAGTTGCTTGACATTGGATTCCCACCACACAAGTGTATGTATGCTGAACacattatttagttttcatgCAAAGCCACTGAAGTCTACCGTTAGGAAACCTCCCTCCAGCAAAAGATGAAAGGACTCTGGAATtctctggaaaataaatgaagattGTTGACCCTGCAAGCCCAGCCGATCAACAGGAAAGCCAGTAAGGCAGTGTGAGTGGTCAAGGAGGAGCACTACAGTCTCAGCTTCAGTTGTGTTTCCACACATTATTCCCTTTAAAATAAGGGCACAGCACTCATTTAAAAGGTGCTGCTGTGATGGTTTGATGTAAAGAGACAtccacaaaataatgaattacttCCCATTCTTTTTCTTATGTCATGCGCAGCACATCAACAGAGGATGTGTAAAGTACACGTTGCGTCTGTATAAGTCAGACCTGTATAAGGTGGTGTGTAGTATAACTTGGGCCTTACGAAGAACCGCCACCCTCAGTAGATGAGATTCCATCCTCTCCCCCTGCAGGGCGCCTCCTGAACAGCAGCAGTCTCCGGTCCCAGGCCGTGCTGCCTAGGCTGCGGACCAGCTCCATGCCACAGCTCTGCTCCAGGTGTTTTGTGGCCTGTACTGCCATGTCCCCGCGGATCCCCAAATCCTTGAAATGCTCGAAGTCCCTGCGGCCCAGCTTGCGGAAGCGCCGCGCGGCCGACCTGTAGCACTTCCAGGGCTGGGCCTCCAGCAGCAGGTGGCGGCAGAGAGTGGCCAGCCGGGAGAGCAGGTCGAGCAGGGCCTGATCGCCGTGATTCAGGTGCACCCACATGGTCACCGCCAGGCAGGAGCCGAGGTCGAAGGAGCAACGCCCGAAGCGGCTCAGGTATCCCCCCAGCTGGGCGCGGCAGGCCTGCTCCTGGGTGATGTCAAGGGAGATGAAGTTCACAGTCTGGGGGAAGGGGTTAGCCTGCTGTGCTCTCTGGATCAGCACCTCGTCCAGGTCACAGCCCAGCATGTACAGCTGAGGGTCCCCGGCGCCCTCCATGTGCCCAATTAGGTGCCTGTACAGTGCCACACTTAAATCCCCGGAATTGCATCCCACGTCGAGCGTCAATATGGGCCCGCTGGCTGCGGCGCTGTAGCCCAGATCCTGGAGCAGTGTGGCCGGTATGAGGCTCAAGCGGTTCTCCGGAGGGTTGAAATCATAATAGTTTATAAAATTCCCGTAAGGAGCCGCTCCTGGATCATCCGCCGCTCCCTCACCTATGGAGGCGGCCATCTTTGTCCGGCTTCTTAACCGTTCCGTGTAGAAACACGATTCCTCTGTGCGCAGGACACTCGGCCCGCTTCAAGTTTGTATGTGCAAATTATGCAGCTTCAAGTTATTTTCCTGTTGACAAAACCAATCCGTACTCGAGGAAATGCAGTATCGCACAGTTGGTATGTTAGAGAAGTTAAAACGAATCTGGCAACACTTCTAGATTACATCAGAGGAAATTGCTTCAATtcgtctgtgtttgtttttctgggaAGAATAACGTTGCTCTTCAGATCCGAGGAGCCACCAACTGTCTCTGTTGGGTTCAATGTCACAgGAATCCCAAAAGCCTGCATCAGCGATGGCACAGCGGCCAATACCTTTAGATGACCCCTGCAGTCAGGGTCAGGCGCCGAACAGGCTCCAGATGCTGCACAAAGCTGCACTAAGGGACTGCAGCAAAACCCCCAGTGACCAATATAGCCTGGGGGAGCAGTCTCCCAGAGAGGTGGTCTGTGCCAACCAGTATATAGATCTAATGGTCCTGTCACAGGACTCCCCAACCGAACTGGGCACACTTGCCACTGGGAAAGCACACTTAGAGTTTAAGAAGGATGAGGAGAACATGGAGCTGGATTCGGTTGGTGTGGAGCATTTCTTCAGCAAGGATTTGGAGCAACAACACAACCCCAAGATTGTAGTGGCTGTTGGTGTGGCAGGAGTAGGCAAAACCACAGTTGTTCAAAAACTGACTTATGACTGGGCTTCTGGGAGGCATTATGGCAGCTTTGCTTTTGTGTTCCCCTTCGAGTTCCGGAAGCTTAACCTGATCGAGGAAGAGATGTCCCTCGCCACCCTCGTGATAAAGCAGCACGCGCACCTTGTCCAGGACGCTGTCAGGGAGGCCCTGCAGAGCCCCGAATCAGTATTGTTCCTATTGGACGGCCTGGACCAGTACCATCACGGGCTGGATTTCACAAAGACGCAGCTCTGCTCGGACCCAGAGAAGGTCATTCCCATGCCCCAGTTGGTCGCCAGCCTGATGTCTGGAATACTACTGAAAGGAAGTTCGGTTCTCGTCACCACTAGACCGACAGCCGCCCTGGTGTCTTTGAGGGAGGTCCAGGTTGATCGGTATCTTGAGATCTTTGGTTTCCACAATCATCACAGGAAGGCCTACTTTGACCGGTTCTTTGAGGACACTAGACTTGCAGACGAAGCTTTTCGGCACATAGAGAAGAATGACTTCCTCTCCACCTTGTGCTACAACCCCTCCTTCTGCTGGATCATCTGCTGTGCGCTGAAGGTGCATTTCAGTGCAGGAGAATGCCCTCCAGAGACTTTGACCCATGTGCTGGCCAGCTTCACCACCAGCCTCCTCCTGTCCAAGGGAGAACCTGCACCAAGGGATCTCATCCTCAGACTGGGGAAGATGGCTGTACATGGGATACGCAACGGGACAGGAGTAGTCTCGAAGGAGGAGATGGCCACCTTTGATATCCAGCCGTGTCACACCTCTCCGGTCCTTTCAACTTTCTTACACACAGAAGGAGGCGCTCTGTGCCGAACAGCATCATTTGTCCACCCTACGATACAGGAGTTCTTGGCCGCTTGCTCATTTTTTCTCCATCCATCTGTGAATATGGAAGAGCTGCTAGAAAAGCCACAGGAATTTCTCGACGTCTTCCTGGTAGGTCTTTCCACGCCTCTGGTGAGGAAGCCACTGGAGACAATCCTGGGAGAGTTTGAGCGCGAGCCACTCCAGAAGACCCAGAATTGGCTCAAGCAGACAACCCAGCAAGCAATGCAGGCCTGGGACAAGGATGAGCATCTCCGCTGCTTCCACCTGCTGTACCATAGCCAAAGCGAGAGTTTAATCAGAGAGGTATTTCAAAAGCCAGTCCACATAAACGCTTCATATGCCACGCTGAGCCTTCTGGACTGCACTAGCATTGCGTACGTCGTGAGCAGCTGCGGCAATGTGGAAAAACTGCAGCTAATGGGTACCAGCCTGACGGAGGCCATGACCAGTCGGCTCACGCTGGCATTCAGCTGCTCCGAGAAAATCGGGGCCTTGCGCTCACAGGCATGCCGGCTGACAGAGTTGGACCTGTCTGTCAACGATCTGTACGACCAGGGGGTGGCCCAGCTCTGTGGCGCACTCAAACACCGCGGTTGCAAACTGGAAAAGCTCAGGCTCGCCCGGTGTGAGCTGACCAGTGGCTGCTGTGAGGACCTGGCTTTGGTGCTGCGCTACAGGAGCTCCAGGCTGAGGGAACTGGAGCTCGGCGTGAACCCACTGAAGGATGAGGGAGTGAAGGTGCTGTGGGGGGCTCTGAAGGACCACCGATGCAAACTGGAGCACCTCGGCGTGGAGCTGGCCAGCCTGACCGATGCCTGCGTTGACGAGCTGACCGCCGCCCTGCGGGTGAACCGCTCTCTGAAGTACATCGAGCTGAAGAACAACAACCTGACGGACGCCTCCATCCCCGAGATCCTCAAGGTGTTCCAGGACAGCCCCACGCTCCAGAAAATCAATGTACGCTACAACAACTTCAGCGAAGAGGCTCTGATGATGCTGGACGAATGCGACCGAGAGATTGAATACTGAGGCTGGAGAATCAACCTCAGGAGGCCACAAGCAACAGACAGAAAAGGATGGGGAGGAGAAAACAGGTGGATTTCTGAGGGCTATCGCTTTGTTATACTGGAGAAACTGGGATTAAAGTTACTGTTTCtcagatgttttcttttgcacctgtggtttttttttttcttcggtTGCATCATCTAGCAAAGAGGCAAATTTTCATACTGTAGAGCTCGGCAATTAACAAATCTGCTTTCCCTTTCCTCACAGTGACACTGCAGTACAAGACTTAATTGTGCAATTATGTCAAAATTGCAGCATTTGCCCTCAACATTATGACACTTGAATTAAGGAATTTGGTTCCTTAAAGCTATGCAACACTtcaacttaaaacaaataaaaaacagcactaTCTTGCACTGCACATTTATTTCTTACACACAATGCCGTTTCCTGAAAAGTATACAAGACTTCAAAGTATGTGTCTGGAATTGCTACAGGTGCCACTAAAGATAGCATCCTCATGACATCGTCAGGCAGGATAGGGTTGGTAAATTTGCACCACTGTAATGAAAAGGCTTGGAGGTAAATAAAAACGCTACATTGGCAAAAAGG
>TU63911
TATGATGGCAAAAACAATTTTTATTGTAATAGTTAACATAAAAAGTGCTTACtccttttaagaaaacaaagaaaggtaCAACTGGCATGCATTCATTCAGCGTCCCGATTTGTTCCACCCAAGAGAGGTTTCTCCAATAAACATTGTTACTTAATTCAGGGTTATTCAAAGGCTTACAGACAGCATCCAGGTGTTTGTAGGACAAAGATGTCTGGACTACAATGGACACAGTTGCTTGACATTGGATTCCCACCACACAAGTGTATGTATGCTGAACacattatttagttttcatgCAAAGCCACTGAAGTCTACCGTTAGGAAACCTCCCTCCAGCAAAAGATGAAAGGACTCTGGAATtctctggaaaataaatgaagattGTTGACCCTGCAAGCCCAGCCGATCAACAGGAAAGCCAGTAAGGCAGTGTGAGTGGTCAAGGAGGAGCACTACAGTCTCAGCTTCAGTTGTGTTTCCACACATTATTCCCTTTAAAATAAGGGCACAGCACTCATTTAAAAGGTGCTGCTGTGATGGTTTGATGTAAAGAGACAtccacaaaataatgaattacttCCCATTCTTTTTCTTATGTCATGCGCAGCACATCAACAGAGGATGTGTAAAGTACACGTTGCGTCTGTATAAGTCAGACCTGTATAAGGTGGTGTGTAGTATAACTTGGGCCTTACGAAGAACCGCCACCCTCAGTAGATGAGATTCCATCCTCTCCCCCTGCAGGGCGCCTCCTGAACAGCAGCAGTCTCCGGTCCCAGGCCGTGCTGCCTAGGCTGCGGACCAGCTCCATGCCACAGCTCTGCTCCAGTGTTGGGGTATTGCACATGAGATTTTAAACCCAAGTCCTCAAACATTAACCTAGACACTATACGATAGTGTCGCGCTGCTAAACCCCAGGGCTCAGACTGCGATCCAACAATCGGGCTCTCAGATTGGCGAGCACCACGAGCTGGCGGTGCTTTGCAATCTATTTGGAATGAATAGTGCTTTGGTTCTCTGTCCAGAATCATACTAGGAATGTTGGCACAGTGGAATCTTGATTGTGCTGGTTAAGTGCTGTGACTGACCAGTAGTTGCTTAGTTTCTATGggaacactttacaataatgtgcACCAATccttaattaatgtatgaatccctCATGCACTACCACTGAGTTCCAATGCTGGCCACATGTAGAAGTTCTAACCCCAAATGTGGTCTGTAACCCTATCTCAGCTTAACCTTTATATATCTGCGATTAACatcagatgaagtgcataagTTATTaatgtggtattcatacatcaattaataATTGACACCCATTATTGTGACATGTGACCGTTTTGATTGCAAGATGCTCTCGAATGCTGGGTGTGAAGAATTCTACACAAACTCAGCACATACAGATAACCCACTTCTGTGGTTGCTACGATCCCAAGCAAGACTTGGGATACGGGTGACTACACAGTTCTGACAGCCGctgaaaataatcaatttaatattaactttttttccatttggtctccaaataaaaattaataaaacaaaacaaaagaaacaaacaaacgaaacaCATAACAATTGATACAAACTCAAGTATGCATGACAATAACAGCTTGGGCAGCCATTCCATCTGCTATAAAACGCAAAGTGGGCAACATGAGCGGTCATGACCCCTGCAAGATTGAGCAACATTACCGATTTGGTTTTATTAGGGTggttcagtttgtattttttggtcTTCGTTGCGATTGTCACTTCAGTTTCCCCTACGATTGTCCTGTCTGTCCTTTCCAAGACTATTTCATGCCTTTAAAAAGTCTTTGTAGCAAGGAGGGTTTAGTGTCCAGGTAAAGGGGGGTGGTGGTGATTGTGGGGTACTGCACATTGGGAAACCACTTCCTTCCTTCACCTTTAGTGCTCTTGTCCCCACACCCCCATTGCCAGGTGCCCATTGGTTCCGTTCTCCCCCTTGGTGAGGGAGTGGCGCTGGGGGGGCTTGGTACCGTCTTTGGTCGCGTCGCTTTCCTCCTCCGAGCTGCTCTCGATGTCGCTGCGGTCATCCTTCGACACTTGCCGCGGACCATGGCTTTGAAGGCAATGCGCACGATGAGGTAGGACCAGATGATGTGCAGTACCTGCAGCACTAGCAAGAGGGCATTGAAGAGCCACCAAGAGGGGTAGGGCCCTATGATCGCCCAGCTCTCAAACAGCGTGGTGTTCAGAATCCTGCAACAGCAAACAGCTCAGTCACTCCCCAATTAAAATGAGCATAGGCGCAACTGTGAGATCCTACCCCCCGTACCACTTCTTGTCATTCAACTCCAAAAAGACTGATCATCCACTCAGAGCTATGGTCACGTGACGCTAACCTCCACCTTACATTTTCAGCTAACTAGAAAATACCCCCAGGGCAGTTGTAAAGTGTCACAAATTAAATTCaggcacttttttgtttttgtgatcatgagaaagtgtctgtgtgtaacaTCTGCCATTCCATTTTCCCCCAATAGGCCATCTTGTCACAGTGGAGGGCGGTTTAGGAAGATGGTCCAGTCAGTGCTGGATTGCATTATTGAAGTCTAGGAAACAAGCAGATCTCTATCTACAACTGCCATATCATGACAGGGGATAGGGACAGTCAATTCATGGCCCTTCTCCAAATCAGTTCTAGGACAGATTTGTTTCAACTAActccttaattatttaattgctcaTCACTCACCGggatcaattaaataatgaacgGAGAGGAACAAAGCACAGAAAAGGAATGGCTCAGAGGGATCATGGCTCAACTTGATCCAGGTAGGGAGgcagataaaacaaaattaaccatACTGACAGGTTCGTTTTGGGGTATGTTTAAAGGAGCAATACATTATCCTTTTTTATACTGTGTCCATTTTGCAACTCCAGAAACAGATGCTGATTGATTCCccactatattattatttatttattagcagacacccttgtcctgtgtgtgcgtctctctctctctctctcgtatatacactcacctaaaggattattaggaacaccatactaatactgtgatTG

Function

GO: NA

KEGG:

id description
K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008725 True 4673 mRNA 0.51 9 9915494 9925896
TU63911 False 3072 lncRNA 0.44 3 9915494 9937752

Neighbor

gene id symbol gene type direction distance location
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding upstream 4721 9861819 ~ 9910773 (+)
AMCG00008721 LOC106566152 coding upstream 179756 9704582 ~ 9735738 (+)
AMCG00008722 NA coding upstream 220422 9692091 ~ 9695072 (+)
AMCG00008720 NA coding upstream 276248 9621109 ~ 9639246 (+)
AMCG00008714 NA coding upstream 378037 9531791 ~ 9537457 (+)
AMCG00008736 NA coding downstream 279586 10217338 ~ 10219366 (+)
AMCG00008738 NA coding downstream 320694 10258446 ~ 10275211 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding downstream 339198 10276950 ~ 10285158 (+)
AMCG00008742 LOC107709223 coding downstream 373830 10311582 ~ 10312097 (+)
AMCG00008745 NA coding downstream 673631 10611383 ~ 10618165 (+)
G51094 NA non-coding upstream 121275 9792138 ~ 9794219 (+)
G51065 NA non-coding upstream 200327 9640756 ~ 9715167 (+)
G51000 NA non-coding upstream 517125 9392027 ~ 9398369 (+)
G50983 NA non-coding upstream 561089 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 720856 9194404 ~ 9194638 (+)
G51129 NA non-coding downstream 35544 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 41646 9979398 ~ 10071199 (+)
G51157 NA non-coding downstream 282481 10220233 ~ 10222915 (+)
G51168 slc48a1,LOC106567162,LOC106572510,LOC105022284 non-coding downstream 337429 10275181 ~ 10281982 (+)
G51209 NA non-coding downstream 620887 10558639 ~ 10563099 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 535915 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 599343 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 792682 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 827527 9081827 ~ 9087967 (+)
G50747 NA other upstream 1248946 8450166 ~ 8666548 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 754625 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 890816 10828568 ~ 10846436 (+)
G51297 NA other downstream 1047138 10984890 ~ 11040674 (+)
G51445 NA other downstream 1522611 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 1756902 11694654 ~ 11704413 (+)

Expression


Co-expression Network