AMCG00008727


Basic Information

Item Value
gene id AMCG00008727
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9927387 ~ 9931515 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008727
GTGGAGGAGACGCGGCTGGAGGAGGGCTGTACACAGACTGCTGCCCTTGTTCCCGAACTGAAGCCCCTAACAGAGACCCTGCAGCCTGGCCAAGgccacccccccagccccaccaACATGAGGGAGGACAGCTTCTCCACTGGGGGGTGCAAGAGATCATCTGTCATCCTGGAGCCAGAGCACAAGAAAACCAATCGCAGTCTGGTCGCCATGGTCCTGGGAAAGCGCCTGGCAGACGTGGGATACCGGGTCTTCTCCGGCTCCATGATGGTGCTCACGGTTTACGCCGGATACCTGTGCGCCCATCGCGGGTACCGCTACATGCAGCGGCAGAAAGAGCTCAAACTGGCTGCAGAAACCCAATCAGAAGAGACCCTGAAAGACTGACAGGCGCTTAGCCCCACCCCTTCCGTGCTAAATACCCCCATATAATGAGAATTGTTTGTTTGGAAACGTTGGCAAGTTTGGGGTTTGTAAAAAGGGAGTcaacatgtatacatttgttttagtgcACATATGATAAAGCAGAGTCTTTCTAAATGATTGTAATCAAGCCCCCTCTTTTGACCTGGGTGGATGCTCATTGTGGAGTACAAGGCTGTTTATTAAAAGGGGTTCAGATGCATCCTGTTGATATATGCTTTTGCCTTACTCTTGGTACTGTATGAGAGTGTGGAAGAGATACCAATACCTGGCACTGGATCATATACTGTAATCTGAAgtcattaaatcattttttcttggatcacttggtaTTGTTATACCCTGGTTATGTACAAAAGCAGGGATGTCTACAATCTTTGCTGACCAATGAACAATTTCCGTACAGGAGATCAATGGTTTAGAGTAGTTCCCAACCCTGGCTTGGGAGAACCCCATActctgctggtttgtgttccaacccagctctcaaatactttattgaactaataattaagAGCTCCCTTGGAACACagaccagcagggtagggggtcctccaggaccagcaGTGGGAACCACAGATTTATAGGTTCTTCTacagcaggggtgtcagactccagtcctggggggctaTAGTATCTGCTGGGTTtcattccagcccagctcttggctcttTAATTGGTCCAATTTAACAATTTAGAttttaacacttctctccaggcTGAAATGTTCTGcgggttcaatgttttgagtcatca
>TU63913
CTTACTTCAGACTCACGTGTCAGAGAGCACTGCACATAACACTGTGACATTGAAAGTAGCTCTTCCACTGAACAGGAGGACGTAGCTTGACAACTGAAAATACCCGGTGGAAGCCATTCCGTGCTGCGGCTGCGTCATCAGAGCTCCGCGTTTTGGCCCGACGTCAGTCGCAGTCTGGTCGCCATGGTCCTGGGAAAGCGCCTGGCAGACGTGGGATACCGGGTCTTCTCCGGCTCCATGATGGTGCTCACGGTTTACGCCGGATACCTGTGCGCCCATCGCGGGTACCGCTACATGCAGCGGCAGAAAGAGCTCAAACTGGCTGCAGAAACCCAATCAGAAGAGACCCTGAAAGACTGACAGGCGCTTAGCCCCACCCCTTCCGTGCTAAATACCCCCATATAATGAGAATTGTTTGTTTGGAAACGTTGGCAAGTTTGGGGTTTGTAAAAAGGGAGTcaacatgtatacatttgttttagtgcACATATGATAAAGCAGAGTCTTTCTAAATGATTGTAATCAAGCCCCCTCTTTTGACCTGGGTGGATGCTCATTGTGGAGTACAAGGCTGTTTATTAAAAGGGGTTCAGATGCATCCTGTTGATATATGCTTTTGCCTTACTCTTGGTACTGTATGAGAGTGTGGAAGAGATACCAATACCTGGCACTGGATCATATACTGTAATCTGAAgtcattaaatcattttttcttgga
>TU63914
CTTACTTCAGACTCACGTGTCAGAGAGCACTGCACATAACACTGTGACATTGAAAGTAGCTCTTCCACTGAACAGTCGCAGTCTGGTCGCCATGGTCCTGGGAAAGCGCCTGGCAGACGTGGGATACCGGGTCTTCTCCGGCTCCATGATGGTGCTCACGGTTTACGCCGGATACCTGTGCGCCCATCGCGGGTACCGCTACATGCAGCGGCAGAAAGAGCTCAAACTGGCTGCAGAAACCCAATCAGAAGAGACCCTGAAAGACTGACAGGCGCTTAGCCCCACCCCTTCCGTGCTAAATACCCCCATATAATGAGAATTGTTTGTTTGGAAACGTTGGCAAGTTTGGGGTTTGTAAAAAGGGAGTcaacatgtatacatttgttttagtgcACATATGATAAAGCAGAGTCTTTCTAAATGATTGTAATCAAGCCCCCTCTTTTGACCTGGGTGGATGCTCATTGTGGAGTACAAGGCTGTTTATTAAAAGGGGTTCAGATGCATCCTGTTGATATATGCTTTTGCCTTACTCTTGGTACTGTATGAGAGTGTGGAAGAGATACCAATACCTGGCACTGGATCATATACTGTAATCTGAAgtcattaaatcattttttcttgga

Function

GO: NA

KEGG:

id description
K18181 COX14; cytochrome c oxidase assembly factor 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008727 True 1179 mRNA 0.49 2 9927387 9931515
TU63913 False 718 TUCP 0.48 3 9929478 9931081
TU63914 False 626 TUCP 0.47 2 9929478 9931081

Neighbor

gene id symbol gene type direction distance location
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding upstream 16614 9861819 ~ 9910773 (+)
AMCG00008721 LOC106566152 coding upstream 191649 9704582 ~ 9735738 (+)
AMCG00008722 NA coding upstream 232315 9692091 ~ 9695072 (+)
AMCG00008720 NA coding upstream 288141 9621109 ~ 9639246 (+)
AMCG00008714 NA coding upstream 389930 9531791 ~ 9537457 (+)
AMCG00008736 NA coding downstream 285823 10217338 ~ 10219366 (+)
AMCG00008738 NA coding downstream 326931 10258446 ~ 10275211 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding downstream 345435 10276950 ~ 10285158 (+)
AMCG00008742 LOC107709223 coding downstream 380067 10311582 ~ 10312097 (+)
AMCG00008745 NA coding downstream 679868 10611383 ~ 10618165 (+)
G51094 NA non-coding upstream 133168 9792138 ~ 9794219 (+)
G51065 NA non-coding upstream 212220 9640756 ~ 9715167 (+)
G51000 NA non-coding upstream 529018 9392027 ~ 9398369 (+)
G50983 NA non-coding upstream 572982 9352978 ~ 9354405 (+)
G50932 NA non-coding upstream 732749 9194404 ~ 9194638 (+)
G51129 NA non-coding downstream 41781 9973296 ~ 9975207 (+)
G51134 NA non-coding downstream 47883 9979398 ~ 10071199 (+)
G51157 NA non-coding downstream 288718 10220233 ~ 10222915 (+)
G51168 slc48a1,LOC106567162,LOC106572510,LOC105022284 non-coding downstream 343666 10275181 ~ 10281982 (+)
G51209 NA non-coding downstream 627124 10558639 ~ 10563099 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 547808 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 611236 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 804575 9116675 ~ 9122812 (+)
G50900 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other upstream 839420 9081827 ~ 9087967 (+)
G50747 NA other upstream 1260839 8450166 ~ 8666548 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 760862 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 897053 10828568 ~ 10846436 (+)
G51297 NA other downstream 1053375 10984890 ~ 11040674 (+)
G51445 NA other downstream 1528848 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 1763139 11694654 ~ 11704413 (+)

Expression


Co-expression Network