AMCG00008728


Basic Information

Item Value
gene id AMCG00008728
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9916185 ~ 9916748 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008728
ATGGAGGGCGCCGGGGACCCTCAGCTGTACATGCTGGGCTGTGACCTGGACGAGGTGCTGATCCAGAGAGCACAGCAGGCTAACCCCTTCCCCCAGACTGTGAACTTCATCTCCCTTGACATCACCCAGGAGCAGGCCTGCCGCGCCCAGCTGGGGGGATACCTGAGCCGCTTCGGGCGTTGCTCCTTCGACCTCGGCTCCTGCCTGGCGGTGACCATGTGGGTGCACCTGAATCACGGCGATCAGGCCCTGCTCGACCTGCTCTCCCGGCTGGCCACTCTCTGCCGCCACCTGCTGCTGGAGGCCCAGCCCTGGAAGTGCTACAGGTCGGCCGCGCGGCGCTTCCGCAAGCTGGGCCGCAGGGACTTCGAGCATTTCAAGGATTTGGGGATCCGCGGGGACATGGCAGTACAGGCCACAAAACACCTGGAGCAGAGCTGTGGCATGGAGCTGGTCCGCAGCCTAGGCAGCACGGCCTGGGACCGGAGACTGCTGCTGTTCAGGAGGCGCCCTGCAGGGGGAGAGGATGGAATCTCATCTACTGAGGGTGGCGGTTCTTCGTAA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008728 True 564 mRNA 0.65 1 9916185 9916748

Neighbor

gene id symbol gene type direction distance location
AMCG00008724 NA coding downstream 122005 9765723 ~ 9794180 (-)
AMCG00008723 NA coding downstream 158238 9740284 ~ 9757947 (-)
AMCG00008718 bloc1s1,LOC107573571 coding downstream 329016 9579389 ~ 9587169 (-)
AMCG00008719 NA coding downstream 351014 9562900 ~ 9565171 (-)
AMCG00008717 NA coding downstream 361251 9531833 ~ 9554934 (-)
AMCG00008729 NA coding upstream 453 9917201 ~ 9920176 (-)
AMCG00008733 cers5,LOC107566328 coding upstream 17310 9934058 ~ 9948099 (-)
AMCG00008735 NA coding upstream 34336 9951084 ~ 9965152 (-)
AMCG00008732 NA coding upstream 53815 9970563 ~ 9975121 (-)
AMCG00008730 smarcd1 coding upstream 62739 9979487 ~ 9998091 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 5385 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 176929 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 337802 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 390498 9521354 ~ 9525687 (-)
G51015 NA non-coding downstream 505211 9409759 ~ 9410974 (-)
G51120 NA non-coding upstream 10497 9927245 ~ 9931102 (-)
G51243 NA non-coding upstream 751963 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 884360 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 922358 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 1140929 11057677 ~ 11140273 (-)
G51008 NA other downstream 522958 9390843 ~ 9393227 (-)
G50788 NA other downstream 1256168 8656728 ~ 8660017 (-)
G50739 NA other downstream 1544855 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1621831 8270324 ~ 8294354 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 421577 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 644118 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 754201 10670949 ~ 10718201 (-)
G51241 NA other upstream 759008 10675756 ~ 10712485 (-)
G51250 NA other upstream 880884 10797632 ~ 10799154 (-)

Expression


Co-expression Network