AMCG00008733 (cers5,LOC107566328)


Basic Information

Item Value
gene id AMCG00008733
gene name cers5,LOC107566328
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 9934058 ~ 9948099 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008733
ATGGTGGGGACGACCTACAAGAGCATGCCAAGTGCTAGTGAGGCGAGAGGAAAGGGAGGGTTTGTGGCCCTGCCATGTGCCTACATCCTGAGGATACAGACAGAGGCGACCAGGAGGGCACAGCCACAAGCCATTCTAGAGAAAGTGTTTACATCCATCACAAAGtaCCCAGACACTCGGAGGCTGGAGGGTCTGTCCAAACAGCTGGACTGGGACGTGCGCCGCATCCAGCGCTGGTTTCGGCACCGGCGTAACCAGGACAAGCCCAGCATCCTCACCAAATTCTGCGAGAGCATGTGGAGGTTTACTTTCTACTTGTACATATTTACGTATGGGATTCGGTTCCTGTGGCAGTCTTCCTGGCTATGGGACACGAGGCAGTGCTGGTACAATTATCCCTACCAGATCCTTACACCTGGGCTATATTATTACTACATCACCGAACTGGCGTTCTACTGGTCACTGATGTTCTCCCAGTTCACTGACATTAAGAGAAAGGACTTCCTCATCATGTTCATCCACCACCTGGCAACCATCAGCCTCATCAGCTTCTCTTACGTCAACAACATGCTGCGCGTGGGCACCCTGGTCATGTGTCTCCACGACACCTCCGACTTCCTGCTGGAGGCTGCCAAGTTGGCGAATTATGCCAAGTACCAGCGCGTGTGTGACACTGTGTTCGCTATGTTCGGGGCGGTCTTCGTGTTCACACGGCTCATCATCTATCCCTGCTGGATTCTGAACACCACGCTGTTTGAGAGCTGGGCGATCATAGGGCCCTACCCCTCTTGGTGGCTCTTCAATGCCCTCTTGCTAGTGCTGCAGGTACTGCACATCATCTGGTCCTACCTCATCGTGCGCATTGCCTTCAAAGCCATGGTCCGCGGCAAGGTGTCGAAGGATGACCGCAGCGACATCGAGAGCAGCTCGGAGGAGGAAAGCGACGCGACCAAAGACGGTACCAAGCCCCCCCAGCGCCACTCCCTCACCAAGGGGGAGAACGGAACCAATGGGCACCTGGCAATGGGGGTGTGGGGACAAGAGCACTAA

Function

symbol description
cers5 Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including EVL; digestive system; immature eye; intermediate cell mass of mesoderm; and periderm. Orthologous to human CERS5 (ceramide synthase 5).

NR:

description
ceramide synthase 5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008733 True 1050 mRNA 0.55 10 9934058 9948099

Neighbor

gene id symbol gene type direction distance location
AMCG00008729 NA coding downstream 13882 9917201 ~ 9920176 (-)
AMCG00008728 NA coding downstream 17310 9916185 ~ 9916748 (-)
AMCG00008724 NA coding downstream 139878 9765723 ~ 9794180 (-)
AMCG00008723 NA coding downstream 176111 9740284 ~ 9757947 (-)
AMCG00008718 bloc1s1,LOC107573571 coding downstream 346889 9579389 ~ 9587169 (-)
AMCG00008735 NA coding upstream 2985 9951084 ~ 9965152 (-)
AMCG00008732 NA coding upstream 22464 9970563 ~ 9975121 (-)
AMCG00008730 smarcd1 coding upstream 31388 9979487 ~ 9998091 (-)
AMCG00008731 asic1 coding upstream 67625 10015724 ~ 10034597 (-)
AMCG00008734 NA coding upstream 111204 10059303 ~ 10065334 (-)
G51120 NA non-coding downstream 2956 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 23258 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 194802 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 355675 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 408371 9521354 ~ 9525687 (-)
G51243 NA non-coding upstream 720612 10668711 ~ 10673855 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 853009 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 891007 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 1109578 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 1215247 11163346 ~ 11164374 (-)
G51008 NA other downstream 540831 9390843 ~ 9393227 (-)
G50788 NA other downstream 1274041 8656728 ~ 8660017 (-)
G50739 NA other downstream 1562728 8367916 ~ 8371330 (-)
G50712 tuba1c,LOC108255233,LOC108433351,LOC103467923,LOC106456382,LOC102313992,LOC107707018,LOC107557552,LOC105930792,LOC107697948,LOC102193505 other downstream 1639704 8270324 ~ 8294354 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other upstream 390226 10338325 ~ 10370316 (-)
AMCG00008744 NA other upstream 612767 10560866 ~ 10603373 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other upstream 722850 10670949 ~ 10718201 (-)
G51241 NA other upstream 727657 10675756 ~ 10712485 (-)
G51250 NA other upstream 849533 10797632 ~ 10799154 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020796 cers5 coding NC_007133.7 CM002906.2 5758090 ~ 5822147 (-)