AMCG00008737 (slc48a1,LOC106567162,LOC106572510,LOC105022284)


Basic Information

Item Value
gene id AMCG00008737
gene name slc48a1,LOC106567162,LOC106572510,LOC105022284
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10276950 ~ 10285158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008737
AACATGTATAGGCTTTAAAGAAGTACTGAAGGGTGTGGCGGGTTAAAGAATGATGTCCCGCAGGAAAAAACGTTTGGGAGCAAACCGGGCCAACAGTATAGGATGGGTCGACTCCTGTCACTTCCCAAATAACTGCTGAGGTCAGTGGGAGCCACGgatttaatgcattgttttggaAAAGGCATTCTCAGATCGGCTACTCTTAAAACAGCACGTTGTTCCGTTTTCAAACCAAAGGCAGGAACAGCATGACTCTATCTAGattacagttgttgtttttttcaggacAATTAGAGCATGCAAAGCAAAGGGGTAAAACTAAATTGACCTGgcaatttatttagtttttaaatgggGGGTTTATctagcaaaaaagaaaaatcaacaaaatatgaCCTAAAAATATGAGATATTTGATCTCTACAACTTTGCCAGTTTTGAGGGCTGTGTGGGAGCAAACTGATTTTGTTCCCCAATCAGTGAATTAACAATGTAGGACAGTGTTTCAGTGCTGGTGTGTCAGGACTGGTTAGTGGAATCAACAGGATTTGAAGGTTGGAGGAGTGGAGATACTCTGCACCAGCTGATGCACATTTTGCAGGGTGGGCTGTGTGGCTCTGTATAGCCCTGCAACAGGAAAAGTGGAATTGTTTAataaacctgaaagctttgggCAGTTGCTAAGCTATAAAGTGTAGCTGAGGTAGCGATccttaaacagatgttttttcgGTCATATCGGGGGGGGGATTTGAGTGTTGTGCACATAGACGGGGTGGTCCAGTGCTTAAGCTGGTGACCAGGTGCTCAGATTCTTGATGGCGTACAATTAGAACAatcctttattttctctctcgcATTGTTCATTTGTGTGGCAGACACATGTATCCCAGGcattatttgctgttttttaatgcatcagGACGATGTTCAGGAggttatattgatatatttgttttgaattgacCTGgctttatattaaacattcttGTTTCACAACCTGGCTGTTGATTTGTTTGCCCTTTAGTCAGTGCAGTCGTTGAGAGGCAGCCTGACTGTGCCAGCCTCTCCATCTGGGCACCGTGCCAGCCCTGGACTATCACACGGGACCCTGGCACCCCCATGCCAGCGACTGTCCTTCTGAAAAGCTGTGCACAGTTCCAGCTCTGCAGAGTTGCTGTGCTCCTGATTTTAAAGTTATaacatttcccttttttgttccttttcgcTTGTTAATTATCGTTCGGTTGCAGTTGCCGGGGGTTTCTCTGTCGCTGTTGTTTGACTGAGACGGGGAAACAATTCAGTGATGCACACTTTGTTGCATCCCACTAATATGCTGTGCAAGACTGACATCACTTCCTCTGCAAGTATTATGAGGACCCCTTTAGAAACTCCtgatattttttcagattttcaaatTGTCAGTTAATAGATATGGCAGTGAATTAGCCTTTCTTTATTCTGAGAGACCTAACACTATACACCATTGTATTGCATCAGTAGGCTACCTGCCACATTGTACGccgctgaaatgtttttgtttccattgtgGACCCAAAATTGTGGAACAGACACGCTTGCGAAAAGTAATATATTCATCATTCTTAACCCCTAAAGTCTGTGTTACACTGAGAATGCAGGCGGTAAATGTGGCTGGCTGTTTCAACCGGCAAAGAAGACGTCACCTCATcggtctctctccctccttcatttttttaatgcaatgaaTCCATTTCGTCAGTTTCAAAAGGAGATGCCTGTCAGCAATTGTCAGTCTGCGGACAAGGAGTGTTTTGAGAACCTGTAATTAGGAGCGGTGTCTGGTGGGGCAGGTCCCTGTCCCATGCTGCTTCTGCATTATGTGTGTCAAGGAAAACAAAGGGGGTTCTTGTCTTAGGATATAGCATGGGAGATATGGAGGCATGCGAGAGAGAACCAGAGCTGTCGTGTCTCTTTAACAAGTTAAAAACATGGGCCCCTTGCATGAGAAGCTCAAATCATAGCTGGCCAGGCTGAAAATCGATATTACCAACAGCAGTATAAAAAAGGACCCACACTGTGACTGTTGGGTTGTAGTAGAGCTCATGTGCTATGTAGAGCTTTTGTTTGCGAAGGGCCCCGTAACTGCCAGGATGGGTTGCAATATCCTGGACCACAGTGTACAGAATGGGCATGGGTTACACTTTATGGGGAGGGTCTGGACGTCTACCAACATGATAATGCTGTCAGTTGGGAGTGTAAGGCAGTGTTTCAAGGAGTAAGGCATTGAAAACAACTTGATGGCCCTGACCTCAACTGTGTAGATTAGAACACGACCGTGATCAACTGGAACAGTGAACCtggaccaaaaacaaaaaccctgtaAATACCAACGTCTCTCGCTAAGCTGGTAACTGCAGTTTTGTGACAGAAAGGCAGAGTATTGTTCTAAACCTCTGCCTAGACcctattaaattaatttgaaatcacTGTCGGTTGCATCCTGTTTGTTAcgtaatacattttgtaatgaagTGTACTCTGCTCCACTCAAAAGACATACAAAGTCCTCAATTCAACCCGAGCCCTACTGGCATCACTCAGCAAATTTGGGTTTGAGAACCATGActaagtttaattttgtttttgtggataTAACTTCTTGTGACCGGACATAAAAAAGGCCCTTCTGCAGCTCGCGTTTCCTGTTTAGGTCACAGGCCGATCGGCAGCTGGGGATCGAAACAGGAACGGGGTCCAGTTTACGTTCCCTTTGAAAGATTGTGCCGAGTCATGCTAGGCCCAGCAGAGCCCACATGACAAGGGCTGCCCTGCTGAGTCATGTTGTGAGGACTCCTATAGTCAGCAATCCAGAAGAGAGCGGGTCACGGTTACAGTAGCCTCTCATCAATgtcagacattaaaaaaatatataattatgattgtaaaaaaaatgatatccCAAATACACTTTTGTCTTTAGCATccatattgttgtttgttttctgtggagTCAAACGCATGCAAGAGGCTCTTCCTCCCTGCGTCTCGTGAGGCACTGGAGGGATTTGAGAACACGGTGTGCTGTGGAGGCTGATGAATGACACACTAACTCTTTCAAAGGACTCTTTCCCAGCATTTCAGTGGCTCGTGCCTTGCAAGGAAAGCAGGTATTGTGTTTGAAGCCAAGAAATACTTCCCCAGAGCCGGAAGAACTGGAAAAGCCCTTCAAACTTAATTGATCTGTTGAGGCGAGAATTTCTCTCTGGCATTACATATGTCTTGCAGTACCCAGTGACTGTAACTGACTCTTAGGAGGATTAGATGCTGGCAGTCAACTTATGTTATAACTTAACCTGTGATTTTTACTGAATACAAACCcatcctttcatttttttaaacccccTCTCCGGTCTGGGCGCTTCCTGTGTGTTAGTTATTCCAGTGGAGGGCAGCACACGTTAGCTTGATGTAGCAGTTTAATATGCAGAGTCAGGCCAGAGAGGGAACCACATTTTAGGATCTGGGGAAGTTATAAAAGTCATAAATCACATGCATCTTATATGTATTTCGCTGACGGCATGATTTCCATCGTGTTTGATAAGAGTGGAAcagatgttttagttttgttttctgggtGTGCTGGCTCTCTGGGCCCTGATCACTCACATCATGTATGTGCAAGATTACTGGCGCACCTGGCTGAAGGGACTCAAGTTCTTCCTCTGCATTGGGGGGCTGTTCTTCGTGTTGGCGGTGGTGGCCTTCGTCACCTTCCTCTCCCTCGCCATCACCCAGCACCAGTCGTTGACCGATCCCAAGAGCTACTACCTGTCCTGCGTGTGGAGCTTCCTCACTCTGAAGTGGGCCTTCCTGCTGGGCCTGTACTCGCACCGGTATCGCAAGGAGTTTGCCGACATCAGCATCCTGAGTGATTTCTGAAGGAAAAGTGAGACCTggggtgaaagagagagagagtgtgagaaaGGAGACAGGAGATAGGGTTGATGCTGTGAGGGGAGCCTAGGGTGTCCTTGATTTTCTgcccttcccccccacccacccactccTGCGTTGGGCTGTACTTGATTGCCACAGAGACACCAGGGACAGGGCTTCAATTCAGCTGGGTGATCTCCtttccttgatttttttttaatacatttctttttgtataacaatatatatatatatatatatatatatatatatatatatatatggttctCCTGTGAGTCACATGTGCTGATTGTTTAGTGCAGATCTTGCTTTGTTTCAGCTTTTGTTCCCCCCCAATCTGTTCAAAAAGGTCCTGTCCCAAGACATGCAGAGTTCAGAGGCGGAAGGATCAGAGTCCATTCtggttgtgtttttgaaagcaacAAAATTCTAGATCACCTGACTAATCAACACAATATAGGAAATTAGAAACCCTTCAGTGGATTCTGCTTATAGCAGtgtatttaattacacatttaaaatcactCACGACAGACTCTGTTACCGTTCTCTTCAAAAATACGTCTACAGATGGACAGTATTTGCTCGATTGATAGACTATTATTAGCCATGTGACATCTGAAAATGCTTGTAAATCGCTTGCAATGATCCTGTATCTCAATGGGCAGTGTCGCTTTGTAACAAGGTAGGAAACAACGTTTTAGCAGTTCACTGATTGCAGACTGgaggtttttttcttcttttcagccAGCGAGGTGTAAGGAGAGCAAAGTCATTGCTTTGACATATGTGGTCACGTTCAAAAGTATTCATGACCCTTGGTACAAATGGACATAAATGCATCATGCTTATATAGCCATTTAGAAAAGTGAActgtttctttcctttcctctgtGTGGCTGGGCTCCCCATCTtgtgtgtgaaagtgaaatCTCCTGGTTACTGTGGTCTGGGTCTGAGGAATCATGTCACACAGACAATGGCTACTGCTTTAGCCAGCTCCCTCTCTGCCTAGTTCAGtctcatttgttttcctgatttcccTGTGGTGAAAACAGAGATGTACTTTgttctgggtttgtttttttccccactgatTGACGCTCTTCTAAATCTGCCACACGACACCCGACAGCAAACTGTCGAGTGAGAAtacaattgtatgtaaaaaaaaacaatgtgatgaaTTGGAACAAGTGTAAGTCGCCCCCGCTaatggtgtctgctaagaaatgtaagaataataataataataataataataataataataataataataaatacagccaTGGGAGAAGAGTGCTGGGCTGCTCTGCCAGAGGGTTTTGGATGATGTGGGGGGGGCAAAAACATATTCTAGGCTGGATGAGAGCGGGTATCTGTAAATTTGGATTTGggcattaaatataaaacaaaatatgctaCTGTTCTTCTCTGGATAAGATTGTCtgccaaggaaaaaaaatatttttaaatgtatttaatattttaacttttatttatgttagttttacatttttggcaTTAAAGAGACGAGCAAAACTCAAGTCTGATAATGATTTTggattgggggaaaaaataaaatccacattaTGACGATCTTCCAGCCGGATGTCACTGTAACTGGACTCTCCCCTCCCTGCTTGGCAGAAGACAGTAGATAGGCAGTAGAGAACCCTTCGGGGGATACAATGCAATGCAGAACTGCGGTCGAATACTGTAGGGAATATACTaaatataccttttttttttctttcaccttaTATTGAGTCTCATGCTGCCAGACCTACACAGACTACCTGTTAACAACCACTTAATCTAGAGGAAATAAGGTTTTAGTTTGGCTAGTAGTTTCCTCACATGCTGCTTATAAAAATGCCACgttctctgtgtgtctggctGCTGTGGTTTCTGTCATTGTGCAGGACTCCTGGACGTCCACCGGGAGGAGCCAGATAAGCGTGTTTCAAATCCTTGCTGCCTCCAGGGTTGTTGCCAGTGAACGGTGAAGCAGCCCACTTGCTTGTTAGCCGATCGGTGCTTCCTTTAGGGTCACTGAGGTCTGAGGTCCTGTCTATGGGTCCAGATGCCACGAGCAGAGCTCACCAAACACTACTTCAGCCGCTAGGATTTGAACAGATACAAGCTGCTATCAAACCAAGAGCTCAGGCTAAACTCCTAGGCTGGAATATTTAGCACACAGAcagccaccccccccacacacacacacacaataatagaACAGTCTATCCTGTGTTATTCGTGACCCCTTTTGGAGTCTGTATTGAGAAGGAAAGGTTGCCTGAAGCCCAGGTGTACAGTTATGTTAAACAGGCAGTGTTTTCCAGAATTAGGGCACAAGTCGACCATATGATGAGCATCGGGACGCACATGAAAAGAGCCACCTGTTGACTATTTCATAACAAGTAGACGAaatgcacaatgtttttttccttttcgaGACAGGCACTCCCATATGAATGTATTCCTCACTTCCTGTGTGGACAGATTGAGACGTGCCCACCTAAATGCCCCATTCAAGCCCCACCTAAACTGCAATTGTCTGCAAGGGGTGAGGTTAATATTGGGGGAAAAAACCTGgacctttttagtttttttttgaaAACCCATGTATAACCTAAAGTTGCTCCCTAGATAAGAACATGAGAATATATAGactatatcatatttatttaatttgtttttggagCTTTAATATGTACTATGACAAAATATtaatcacagaaaatgtaacTCACTGAAAGGTCCTATACTTTCTCAAGCCTGTGAATCTTACTggaaagaaaattagaaaaataatagatGGGCAGTAGTAGAGcataagttttgttttgtttgttttctcctttttaatCCTACTGGGAATTGGGTCTCAGTTTGCACTTTGTTACTTAAAAGAAGATGACTTCTCAATGTCTGTTTCAGTAGTTTCCCTGTAGCTCCACATGCATGCTTGTCACaagatattttttaacaaaattattTGGTAAAAGTAATGttggaaaacatacattttaaacttgcacCTTCTTTGAGTtcatgtctgtttattttaaaccagaCTCTCTTATTCCATCTCATAGTGCAATTGCCGTATAGATTGTATACTTTAGACCTACACatacagataaaacaaaaagtacttGTGTAAAATTTTGTGTATGTAACAGTGTAttcaagaggaaaaaataataaaatattctttTATCA

Function

symbol description
slc48a1 Enables heme binding activity and heme transmembrane transporter activity. Involved in heme transport. Located in endosome membrane; lysosomal membrane; and plasma membrane.

NR:

description
PREDICTED: heme transporter HRG1 isoform X1

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008737 True 7176 mRNA 0.43 3 10276950 10285158

Neighbor

gene id symbol gene type direction distance location
AMCG00008738 NA coding upstream 1739 10258446 ~ 10275211 (+)
AMCG00008736 NA coding upstream 57584 10217338 ~ 10219366 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding upstream 366177 9861819 ~ 9910773 (+)
AMCG00008721 LOC106566152 coding upstream 541212 9704582 ~ 9735738 (+)
AMCG00008722 NA coding upstream 581878 9692091 ~ 9695072 (+)
AMCG00008742 LOC107709223 coding downstream 26424 10311582 ~ 10312097 (+)
AMCG00008745 NA coding downstream 326225 10611383 ~ 10618165 (+)
AMCG00008746 tmem106c,LOC107704621 coding downstream 333568 10618726 ~ 10625169 (+)
AMCG00008753 NA coding downstream 512613 10797771 ~ 10803672 (+)
AMCG00008754 NA coding downstream 609884 10895042 ~ 10906610 (+)
G51157 NA non-coding upstream 54035 10220233 ~ 10222915 (+)
G51134 NA non-coding upstream 205751 9979398 ~ 10071199 (+)
G51129 NA non-coding upstream 301743 9973296 ~ 9975207 (+)
G51094 NA non-coding upstream 482731 9792138 ~ 9794219 (+)
G51065 NA non-coding upstream 561783 9640756 ~ 9715167 (+)
G51209 NA non-coding downstream 273481 10558639 ~ 10563099 (+)
G51210 NA non-coding downstream 279216 10564374 ~ 10564940 (+)
G51211 NA non-coding downstream 281579 10566737 ~ 10567811 (+)
G51212 NA non-coding downstream 284552 10569710 ~ 10569936 (+)
G51220 NA non-coding downstream 324588 10609746 ~ 10673784 (+)
AMCG00008725 NA other upstream 339198 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 345435 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 897371 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 960799 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 1154138 9116675 ~ 9122812 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 407219 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 543410 10828568 ~ 10846436 (+)
G51297 NA other downstream 699732 10984890 ~ 11040674 (+)
G51445 NA other downstream 1175205 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 1409496 11694654 ~ 11704413 (+)

Expression


Co-expression Network