AMCG00008742 (LOC107709223)


Basic Information

Item Value
gene id AMCG00008742
gene name LOC107709223
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10311582 ~ 10312097 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008742
ATGAGAGAGGAGCTGTCTTGCCCGGATTCCCCGGAGGGAGGGCTAGAAACCAGCGAGGAGGAGCTGGACCGCATCCAGAAGAAGTGTGGCAGCAGGAAGCGGGTGCCCTACCCCAAGAAGGAGGGTGAGGAGAGGGGAGGTGGCAGCCCCAACAGCCTGGTTCCTGCTGGGCCCAAGCGCCCCAAGAAGAGCCCCCTGGCGCCCGGGCAGTCCTTCGAGGATCTGCACACCCAGCGAGTGATCGCCAACGTGCGGGAGCGCCAGCGCACCCAGTCCCTGAACGACGCCTTCGCCTCGCTGCGCAAGATCATCCCCACCCTGCCCTCGGACAAGCTGAGCAAGATCCAGATCCTCAAGTTGGCCTCGCGCTACATTGATTTTCTCTACCAGGTGCTGCAGAGTGACGAGATGGACAGCAAGCTGGCCAGCTGCAACTACCTGGCCCATGAGCGGCTCAGCTACGCCTTCTCCGTGTGGAGGATGGAGGGAGCCTGGTCCATGTCTGCCACCCACTAG

Function

NR:

description
PREDICTED: twist-related protein 2-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008742 True 516 mRNA 0.63 1 10311582 10312097

Neighbor

gene id symbol gene type direction distance location
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding upstream 26424 10276950 ~ 10285158 (+)
AMCG00008738 NA coding upstream 36371 10258446 ~ 10275211 (+)
AMCG00008736 NA coding upstream 92216 10217338 ~ 10219366 (+)
AMCG00008726 LOC106514726,LOC107385311,LOC101481525,LOC103356561,LOC106928590 coding upstream 400809 9861819 ~ 9910773 (+)
AMCG00008721 LOC106566152 coding upstream 575844 9704582 ~ 9735738 (+)
AMCG00008745 NA coding downstream 299286 10611383 ~ 10618165 (+)
AMCG00008746 tmem106c,LOC107704621 coding downstream 306629 10618726 ~ 10625169 (+)
AMCG00008753 NA coding downstream 485674 10797771 ~ 10803672 (+)
AMCG00008754 NA coding downstream 582945 10895042 ~ 10906610 (+)
AMCG00008755 NA coding downstream 599030 10911127 ~ 10929774 (+)
G51168 slc48a1,LOC106567162,LOC106572510,LOC105022284 non-coding upstream 29600 10275181 ~ 10281982 (+)
G51157 NA non-coding upstream 88667 10220233 ~ 10222915 (+)
G51134 NA non-coding upstream 240383 9979398 ~ 10071199 (+)
G51129 NA non-coding upstream 336375 9973296 ~ 9975207 (+)
G51094 NA non-coding upstream 517363 9792138 ~ 9794219 (+)
G51209 NA non-coding downstream 246542 10558639 ~ 10563099 (+)
G51210 NA non-coding downstream 252277 10564374 ~ 10564940 (+)
G51211 NA non-coding downstream 254640 10566737 ~ 10567811 (+)
G51212 NA non-coding downstream 257613 10569710 ~ 10569936 (+)
G51220 NA non-coding downstream 297649 10609746 ~ 10673784 (+)
AMCG00008725 NA other upstream 373830 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 380067 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 932003 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 995431 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 1188770 9116675 ~ 9122812 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other downstream 380280 10692377 ~ 10771675 (+)
AMCG00008752 LOC107666323 other downstream 516471 10828568 ~ 10846436 (+)
G51297 NA other downstream 672793 10984890 ~ 11040674 (+)
G51445 NA other downstream 1148266 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 1382557 11694654 ~ 11704413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021376 twist3 coding NC_007134.7 CM002907.2 2669 ~ 9339 (+)