AMCG00008748 (LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866)


Basic Information

Item Value
gene id AMCG00008748
gene name LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10670949 ~ 10718201 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008748
ATGCCGTCAGTCATCAGCTTTCCCTATGaaaaggaaataacaTGTCCCCCACTGCCCCTCCCACCCCCGCACCTTGACAGGTATGAAGATGAAATCAACCAGCGGGCCTCAGTGGAGAATGATTTTGTCCTGCTGAAGAAGGATGTTGATGGTGCCTACATGAACAAGATTGAGCTGGAGGCCAAGGCGGATGCCCTTCAGGATGAAATCAACTTCCTCAGGGCCATCTACGAGGAGGAGCTGCGCGAGCTGCAGGGCCAGATCAAGGACACCTCAGTGGTGGTGGAGATGGACAACAGCCGCAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTATGAGGACATTGCCAACCGGAGCCGTGCAGAGGCGGAGAGCTGGTACAAGGCCAAGTACGAGGAGATGCAGAGCTCAGCTGGGAAATTTGGGGATGACCTCCGCAACACCAAGCAAGAGATTGCTGAGCTGAACCGCATGATCAGCCGGCTGCAGAATGAGATCGAGGCTGTCAAGGGCCAGCGCGCCAACCTGGAGGCCCAAATCACAGAGGCTGAGGAGCGCGGTGAGCTGGCGGGTTACTCAGCCTCCATTACTCACTCCAAGAAAACCAAGCATGGCAACATGGTCTTCTGGGAATCGATCCCCTGCAGAATCGTCCTGAAGAGGGACTGGACTCATCAAAACCCACAGGCCCCTCCTGGCACTGCAGCCCTAGAGGAGGCTGAGGCCTCTGCTTCCTGTGGCCCTTGTGACTCCTTGGTCAATGCAGAGGTCCAGTGGGGCAGTGAAAGATGGGCAGTGTTGATCAGTGGTATCGCaggtgtgtctctgtctcagcACTGTGTGTCATCCCAGGTGGAGGagacagagctggaggagggcTGTACACAGACTGCTGCCCTCATTCCTGACCTGAAGCCCCAAACGGAGACCCTGCAGCCTGGCCAGGGCTGCCCACCAAGCCCCTCCAGCATGAGGGAGGACAGCTTCTCCACTGGGGGGCACAACAGATCTCCTTCCCAGGCAGAGGTGGATGTCTGCCTGGAGCCAGTGCACAAGAAAGCCAAGTGCTGA
>TU64119
CAGCCAAGGACCTGCTGGTAAAGCTTCTATAACTGCCCCCGCTGCCGCCACCACCGCCGCCACCGCCGCCACCGCCCATGCTGACGCGGCCGCTGCTGATACggccactgccccccccacccccagagcTGGATCTGAAACTTATAGAGGAACGACTGCTGCTCatttttgctgctgttgctgtttttcctgTGCAAGGTCGAAGTCAAGCTGAGAACTGATAAATGGTAATAGTAAAATAAGCCAGAGAGGTATCGCCTCGAACGAGAGAGCAGGCGAGGAGGGAACAGCAGCGATCACAAGAAGGAGAATCAACTCCTCTGAGCCGCTACCTGCCTTGGTCCCCACCTATATACCCTTCAAGAGTGGGCGGGTCCACCTCCTGTTTGAGACACTACCTCCACCCCTCTCAGGGCCATCTACGAGGAGGAGCTGCGCGAGCTGCAGGGCCAGATCAAGGACACCTCAGTGGTGGTGGAGATGGACAACAGCCGCAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTATGAGGACATTGCCAACCGGAGCCGTGCAGAGGCGGAGAGCTGGTACAAGGCCAAGTACGAGGAGATGCAGAGCTCAGCTGGGAAATTTGGGGATGACCTCCGCAACACCAAGCAAGAGATTGCTGAGCTGAACCGCATGATCAGCCGGCTGCAGAATGAGATCGAGGCTGTCAAGGGCCAGCGCGCCAACCTGGAGGCCCAAATCACAGAGGCTGAGGAGCGCGGTGAGCTGGCGGTGAAGGACGCCAAGGCCAGGATCAAGGACCTGGAAGACGCG
>TU64120
CACCTTGTCGATGAAGGAGGCGAAGCGGTTGTTGAGAGTCTTGATCTGCTCCTTCTCCTGGGTGCGGACCACCTGGATGTTGGGGTCGATAACTAAGTCCGGGGGGTTCAGCAGTTTCAGATTGGCAGTCACGGAGGTGATGAGAGGGACGCCGCCATCTCCGCCACCGAACATGCCATACCCTCCGCCGCCGCTGCCACCACCACCGCCACCTCCCAAGCCGATGCCACCTCCCAGGCCGAtgccgccaccaccaccaccaccggaTCCAAAGCCTAAGCCACCACCTGATGAGTACACAGTGTAGCTTGACTTCCGAGTCACTGGCGCCGCAGCCAAGGACCTGCTGGTAAAGCTTCTATAACTGCCCCCGCTGCTGCCACCACCGCCGCCACCGCCGCCACCGCCCATGCTGACGCGGCCACTGCTGATACggccactgccccccccacccccagagcTGGATCTGAAACTTATAGAGGAACGACTGCTGCTCatttttgctgctgttgctgtttttcctgTGCAAGGTCGAAGTCAAGCTGAGAACTGATAAATGATAATAGTAAAATAAGCCAAAGAGGTATCGCCTCGAACGAGAGAGCAGGCGAGGAGGGAACAGCAGCGATCACAAGAAGGAGAATCAACTCCTCTGAGCCGCTACCTGCCTTGGTCCCCACCTATATACCCTTCAAGAGTGGGCGGGTCCACCTCCTGTTTGAGACACTACCTCCACCCCTCTCAGGGCCATCTACGAGGAGGAGCTGCGCGAGCTGCAGGGCCAGATCAAGGACACCTCAGTGGTGGTGGAGATGGACAACAGCCGCAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTATGAGGACATTGCCAACCGGAGCCGTGCAGAGGCGGAGAGCTGGTACAAGGCCAAGTACGAGGAGATGCAGAGCTCAGCTGGGAAATTTGGGGATGACCTCCGCAACACCAAGCAAGAGATTGCTGAGCTGAACCGCATGATCAGCCGGCTGCAGAATGAGATCGAGGCTGTCAAGGGCCAGCGCGCCAACCTGGAGGCCCAAATCACAGAGGCTGAGGAGCGCGGTGAGCTGGCGGTGAAGGACGCCAAGGCCAGGATCAAGGACCTGGAAGACGCG

Function

NR:

description
PREDICTED: keratin, type II cytoskeletal 8-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008748 False 1083 mRNA 0.57 7 10670949 10678973
TU64119 False 816 TUCP 0.59 6 10677263 10718201
TU64120 True 1148 TUCP 0.59 6 10677263 10700483

Neighbor

gene id symbol gene type direction distance location
AMCG00008747 NA coding downstream 8758 10655011 ~ 10662191 (-)
AMCG00008743 LOC103045919,LOC106565233,LOC102299085,LOC100696631,LOC102216220 coding downstream 181183 10472530 ~ 10489766 (-)
AMCG00008739 NA coding downstream 413098 10221420 ~ 10257851 (-)
AMCG00008740 NA coding downstream 477684 10183119 ~ 10193265 (-)
AMCG00008734 NA coding downstream 605615 10059303 ~ 10065334 (-)
AMCG00008750 e3,LOC108429286,LOC106565226,LOC107705699 coding upstream 1291 10719492 ~ 10725176 (-)
AMCG00008751 krt8,LOC105023875,LOC107551542,LOC108411779,LOC107681390 coding upstream 45815 10764016 ~ 10771654 (-)
AMCG00008756 NA coding upstream 240383 10958584 ~ 10972379 (-)
AMCG00008765 NA coding upstream 285955 11004156 ~ 11011571 (-)
AMCG00008763 pcbp2,LOC100691124,LOC103464415,LOC106956729 coding upstream 303347 11021548 ~ 11035727 (-)
G51120 NA non-coding downstream 739847 9927245 ~ 9931102 (-)
G51103 LOC106928590,LOC103386378,LOC107385311,LOC106514726 non-coding downstream 760149 9909611 ~ 9910800 (-)
G51081 NA non-coding downstream 931693 9738646 ~ 9739256 (-)
G51057 NA non-coding downstream 1092566 9577268 ~ 9578383 (-)
G51044 NA non-coding downstream 1145262 9521354 ~ 9525687 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding upstream 82907 10801108 ~ 10803709 (-)
G51261 eif4b non-coding upstream 120905 10839106 ~ 10839672 (-)
G51344 NA non-coding upstream 339476 11057677 ~ 11140273 (-)
G51354 LOC100846954 non-coding upstream 445145 11163346 ~ 11164374 (-)
G51403 NA non-coding upstream 508286 11226487 ~ 11258218 (-)
AMCG00008744 NA other downstream 67576 10560866 ~ 10603373 (-)
AMCG00008741 hdac7,LOC107704627,LOC107752451 other downstream 300633 10338325 ~ 10370316 (-)
G51008 NA other downstream 1277722 9390843 ~ 9393227 (-)
G50788 NA other downstream 2010932 8656728 ~ 8660017 (-)
G50739 NA other downstream 2299619 8367916 ~ 8371330 (-)
G51250 NA other upstream 79431 10797632 ~ 10799154 (-)
AMCG00008777 dctn2,LOC102785932 other upstream 517441 11235642 ~ 11326359 (-)
AMCG00008815 NA other upstream 1883090 12601291 ~ 12605260 (-)
G51797 NA other upstream 2172610 12890811 ~ 12891597 (-)
G51799 NA other upstream 2177134 12895335 ~ 12897134 (-)

Expression


Co-expression Network