AMCG00008749 (krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440)


Basic Information

Item Value
gene id AMCG00008749
gene name krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10692377 ~ 10771675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008749
atGAGCAGCAGTCGTTCCTCTATAAGTTTCAGATCCAgctctgggggtggggggggcagtggccGTATCAGCAGTGGCCGCGCTTTGGAtccggtggtggtggtggtggcggcaTCGGCCTGGGAGGTGGCATCGGCTTGGGAGGTGGCGGTGGTGGTGGCAGCGGCTATGGAATGGGCATCGGATTTGGCAGTGGCGGTGGCGGTGGCGGTGGCGGAGGCGGTGGCGGTGGCTATGGCATGTTCGGTGGTGGAAGCGGAGGCGGAGGGTGGTGGCTTAGGCTTTGGATCCggtggtagtggtggtggtggcggcaTCGGCCTGGGAGGTGGCGGCGGTGGTGGCAGCGGCTATGGAATGGGCATCGGATTTGGCAGTGGCAGTGGCGGTGGCGGTGGCGGTGGTGGAGGATATGGCATGTTTGGTGGTGGAAGCGGAGGCGGAGGATATGGCATGTTCGGTGGCGGTGGTGGAGGCGGAGGGTATGGCATGTTCGGTGGCGGAGATGGCGGCGTCCCTCTCATCACCTCCGTGACTGCCAATCTGAAACTGCTGAACCCCCCGGACTTAGTTATCGACCCCAACATCCAGGTGGTCCGCACCCAGGAGAAGGAGCAGATCAAGACTCTCAACAACCGCTTCGCCTCCTTCATCGACAAGGTGAGTGCCCCCCCTTCCAGCTCCCTGTTGGCGAGTAATTATAACTGCACATCTTCTGCCAACTTAAAAACACTCCTGCACCTTTACAGGTACGAAGATGAAATCAACAAGCGGGCCTCAGTGGAGAATGATTTTGTCCTGCTGAAGAAGGATGTCGATGGTGCCTACATGAACAAGATTGAGCTGGAGGCCAAGGCGGATGCCCTCCAGGATGAAATCAACTTCCTCAGGGCCATCTACGAGGAGGAGCTGCGCGAGCTGCAGGGCCAGATCAAGGACACCTCAGTGGTGGTGGAGATGGACAACAGCCGCAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTATGAGGACATTGCCAACCGCAGCCGTGCAGAGGCAGAGAGCTGGTACAAGGCCAAGTACGAGGAGATGCAGAGCTCAGCTGGGAAATTTGGGGATGACCTCCGCAACACCAAGCAAGAGATCGCCGAGCTGAACCGCATGATCAGCCGGCTGCAGAACGAGATTGAGGCTGTCAAGGGCCAGCGCGCCAACCTGGAGGCCCAGATTGCAGAGGCCGAGGAGCGTGCCTCCGCCGCCACCGCCTCCCATTCCATAGCCTCCGCCGCCACCGCCTCCCATTCCAAatcctcctccaccaccaccaccaccggcGGAGAagtctag
>TU64057
TGGTAAAAGATGCCTAGTTTGGAAGACAATGTTATGTTACTGGCAATACCATAGTAATTATAACTGCACATCTTCTGCCAACTTAAAAACACTCCTGCACCTTTACAGGTACGAAGATGAAATCAACAAGCGGGCCTCAGTGGAGAATGATTTTGTCCTGCTGAAGAAGGATGTCGATGGTGCCTACATGAACAAGATTGAGCTGGAGGCCAAGGCGGATGCCCTCCAGGATGAAATCAACTTCCTCAGGGCCATCTACGAGGAGGAGCTGCGCGAGCTGCAGGGCCAGATCAAGGACACCTCAGTGGTGGTGGAGATGGACAACAGCCGCAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTATGAGGACATTGCCAACCGCAGCCGTGCAGAGGCAGAGAGCTGGTACAAGGCCAAGTACGAGGAGATGCAGAGCTCAGCTGGGAAATTTGGGGATGACCTCCGCAACACCAAGCAAGAGATCGCCGAGCTGAACCGCATGATCAGCCGGCTGCAGAACGAGATTGAGGCTGTCAAGGGCCAGCGCGCCAACCTGGAGGCCCAGATTGCAGAGGCCGAGGAGCGTGGTGAGCNNNN
>TU64058
TCAGAGGAGTTGATTCTCCTTCTTGTGATCGCTGCTGTTCCCTCCTCGCCTGCTCTCTCGTTCGAGGCGATACCTCTCTGGCTTATTTTACTATTACCATTTATCAGTTCTCAGCTTGACTTCGACCTTGCAcaggaaaaacagcaacagcagcaaaaatGAGCAGCAGTCGTTCCTCTATAAGTTTCAGATCCAgctctgggggtggggggggcagtggccGTATCAGCAGCGGCCGCGTCAGCATGGGCGGTGGCGGCGGTGGCGGCGGTGGTGGCGGCAGCG
>TU64061
gggagaggtCAGAGAGAGCACTCACTTGTTCTTGAAGTCCTCCACCAGGCCCTGCATGTTCTGCAGATCGGCCTCCAGCCTCATCTTGTCCTGGCCCAGGCTGTCCAGCTGGCGGCGCAGGTTGGCGATGTAGGCCTCGAACATGGCATCGATGTTGGAGCGGGTGGTGGTCTGGCCCTGTAACAGATTCCACTTGGTCTCCAGCATCTTGTTCTGCTGCTCCAGGAAGCGCACCTTGTCAATGAAGGAGGCGAAGCGGTTGTTGAGAGTCTTGATCTGCTCCTTCTCCTGGGTGCGGACCACCTGGATTTTGGGGTCGATCTCCAGGTTGAGGGGGGCCAGCAGGCTCTTATTGTAATTTACGGCCGTGATCGGAGCCACGTTGCCCCCCCCGAAGCCCATGCCCATGCCCATGCCCAGGCCAGAGCCCCCTCCATAAGCCGTAGAGCTGGAGATGTAGCTCCCGCCGCCCATGCTGCCGGCCCCGAACCCGTAGCCACCCCCCACAGCCCTGCCAGAGCTCCCCATGCTGCTGCTGACAGTGCTGAAGCTCTTCCTGGCCACAGAAGGGCCACTGTAGGATAAGGAGCTGTAGTTTCGGGGGACCATGCcaccgctgctgctgctcctgctggtGGTTGTCACGGTTCTCCTCATCTTGGCAAAGATTGAGATTGTTttgcaggggagagagagagagagagagagagagctgtcctGCTGTATTGTAGAGAGCTAGAGGCAGATAGAAC

Function

symbol description
krt8 Predicted to be located in cytoplasm. Is expressed in several structures, including EVL; cardiovascular system; integument; pectoral fin; and sensory system. Human ortholog(s) of this gene implicated in liver cirrhosis. Orthologous to several human genes including KRT8 (keratin 8).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008749 True 1338 mRNA 0.61 9 10692535 10719316
TU64057 False 609 TUCP 0.54 5 10705478 10707093
TU64058 False 285 lncRNA 0.56 2 10692377 10718162
TU64061 False 752 lncRNA 0.59 2 10768653 10771675

Neighbor

gene id symbol gene type direction distance location
AMCG00008746 tmem106c,LOC107704621 coding upstream 67208 10618726 ~ 10625169 (+)
AMCG00008745 NA coding upstream 74212 10611383 ~ 10618165 (+)
AMCG00008742 LOC107709223 coding upstream 380280 10311582 ~ 10312097 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding upstream 407219 10276950 ~ 10285158 (+)
AMCG00008738 NA coding upstream 417166 10258446 ~ 10275211 (+)
AMCG00008753 NA coding downstream 26096 10797771 ~ 10803672 (+)
AMCG00008754 NA coding downstream 123367 10895042 ~ 10906610 (+)
AMCG00008755 NA coding downstream 139452 10911127 ~ 10929774 (+)
AMCG00008758 NA coding downstream 166564 10938239 ~ 10949947 (+)
AMCG00008757 NA coding downstream 178339 10950014 ~ 10950787 (+)
G51220 NA non-coding upstream 18593 10609746 ~ 10673784 (+)
G51212 NA non-coding upstream 122441 10569710 ~ 10569936 (+)
G51211 NA non-coding upstream 124566 10566737 ~ 10567811 (+)
G51210 NA non-coding upstream 127437 10564374 ~ 10564940 (+)
G51209 NA non-coding upstream 129278 10558639 ~ 10563099 (+)
G51252 NA non-coding downstream 32231 10803906 ~ 10804107 (+)
G51265 NA non-coding downstream 96260 10867935 ~ 10910645 (+)
G51283 NA non-coding downstream 179402 10951077 ~ 10953420 (+)
G51298 NA non-coding downstream 248541 11020216 ~ 11057436 (+)
G51446 NA non-coding downstream 694137 11465812 ~ 11466083 (+)
AMCG00008725 NA other upstream 754625 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 760862 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1312798 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 1376226 9310086 ~ 9316151 (+)
AMCG00008696 nabp1,LOC106565411,LOC106575791,LOC107675336 other upstream 1569565 9116675 ~ 9122812 (+)
AMCG00008752 LOC107666323 other downstream 56893 10828568 ~ 10846436 (+)
G51297 NA other downstream 213215 10984890 ~ 11040674 (+)
G51445 NA other downstream 688688 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 922979 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1767923 12539598 ~ 12549618 (+)

Expression


Co-expression Network