AMCG00008752 (LOC107666323)


Basic Information

Item Value
gene id AMCG00008752
gene name LOC107666323
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10828568 ~ 10846436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008752
GAGGGCCCATGCTGCGGCTGAGCGCTGCCATTGGCCCGCGGCAGGTCGGGCGTCCTCCCGAGCGGCGACTCCGCGGCCACGTGATAAACACGTGACGCCTCCATCCGGGACTCTGACACGGACTCACTCTCCATCATGGCGGCGTCAGCtaagaagaagaataagaaggGGAAGACCCTCACCCTGACCGACTTCCTGGCAGAGGACAGTGGTGGCAATGCACCCAGCTACCCCGCCCCCAAGCCCACCAGCTGGGCAGACGAGACTGATGACCTGGAAGGAGATGTTTCCACCTCATGGCACACAGAGGACGACATGTACCGCGCCCCCCCCATTGACCGCTCTATCCTGCCCACGGCACCCCGCGCCGCCCGTGAGCCCAATGTGGACCGTTCCCGCCTGCCCCGCAGCCCCCCCTACACCGCCTTCCTGGGCAACCTGCCCTACGATGTCAGTGAGGACTCAATCAAGGACTTCTTCAGGGGGCTCAGTatcAGCGCTGTGCGGCTGCCCAGAGAGCCCAGCAACCCTGAGCGTCTCAAAGGCTTTGGCTACGCTGAGTTTGATGATGTGGACTCCTTGCTGCGAGCCCTGAGTCTCAACGAGGAGAACCTGGGTAACCGAAGAATCCGAGTGGACATTGCAGACCAGTCACAAGAGAAAGATCGTGATGATCGCTCTGGGTGTGGCCGTGACCGGGACAGGAACAGGAGCGACGGCGGCCCTGACAAGACAGACAGTGACTGGAGGGCACGGCCGAGCGCGGACAGCGACGACTCTGGCCCGCCTCGGCGCGATGACGCTTTTGGCGAGCGGTCAAGGGATCGCTATGAGTCGGACCGCTTCCGCGATGGCCCGCGGAGGGACAATGACCGGTATGAGGGGGGCAGAGACCGTTACCGGGACAGATATGATGACCGGGACCGTCGCGACTACGACCGAGGAGGATTCGACTCTCGCGGTGGCAGCCGGCGGGCTTTCGGCAGCGGGTTCAGGCGTGACAACGACGACGGACGTGACAATTTCCGGGGCAGTGCAGATCGCTATGGCGACCGGTACGGGGAACGCGAAGAACGTTACGAGCGCAAGGATGAGCGCCGTGACGATAGAGGCCCACTGCAGAGGCCCAAGCTCCAGCTGAAGCCCCGCAGCGTGCCCAAGGAGGAGGACCGGGTTGTGCCCCCCACACAGACGGGCCGCGCAGCCTCCATCTTCGGAGGGGCGAAGCCCGTGGACACCGCGGCCAAGGAGCGCGAGGTGGAGGAGCGCCTGAAAAAGGAGCAGGAGAGGCTGCAGAGGCAGCTGGAGGAGGACAAGGGCAGAGCACCCGAGCGGCGGCCCAGGGAGAGGCATCCGAGCTGGCGCAGTGAGGACCAGCCTGCTGAGCGATCAAGGACTGGGAGCGAGTCTTCCCAACCTGGCAGCACTTCTGGACGGAGTTCCCGACGCAGGGAGAGCGAGCGTTCTGTGGAGAACGAGGTGTTTGGACGTGATGAGGACCCCCCTTCCCCTGGGGCCCGCCCCCCTGCCAAGCATGACTCCCTGCCCCTCAAAGTGGTGCCAGCCCCTCCGCCCAAGGAGAATGCTTGGGCCAAGCGGAGCACTGTGTCTGGAGGCTCCAGTGAGGGAGAGGGGCGCTCCCCAACGCCTCCTCCCCCTCAATGTCGGGCTCTCCTTGCAGATGAGAACAAGGCGGATGGTGTGCGGCGGGAGAGAGGCCCCGCGAAGGGGCGGGGGGGTACAGCGGGTCCCGGGACAGGGAGGGGGCATGCCGACGCAGCGAACAGAGACCGGCGAAGGGAGGCAGACAGAAAAGACGGAAGAAGGGAACGAGACTGCAGACCAGCACCTGAGCCAAAGAAATTCGAGGAATCACCCAGTCCTAAATTCAGCTCCGCAAGTAAATACGCAGCCTTGCTAATGGACGGCGAGCAAGGAGATGATGTGGAGGAAAACatggattaaaaaatattacatcattaatcaattaaaagtaaaaatgataaaaaaaggaaaaaaaaaatctccacaACCGGACAAGCACCGGCTATTCCtctccccaaccccccccaccccacttcCCTTTCAGGACTCTCTATCTGAAATAGAATATACGGGACTTGTGTTTTAAAAGAggagggggaaaagaaaaaaagaatggcaaaattgaataaataattataataaataaaaaagtggaaaaaccTTCAAAGTGAA
>TU64133
CACAGTTACCTTACATGTAAAAATAGCACTTATAATTTATAGCGCATGAATCCGTGCAGTTCTGCTCTTAAGCCGACGATAACAGTACCATGATCCACAGATGAATGCACCGTTGTTTGTCCAAGAACTGAAGTCCTGCTTTTGTGTCCTCCATTTTGATCTCTCTCTGATTggactgtttttgttgtgtccccccccccccgttttGTCTGCAATTCCATTCATCCTCCAGTTCCTCAAGCTCTTCAGATGAAAAAGCGTCTCAAAAAGAAAAGACGGAAGAAGGGAACGAGACTGCAGACCAGCACCTGAGCCAAAGAAATTCGAGGAATCACCCAGTCCTAAATTCAGCTCCGCAAGTAAATACGCAGCCTTGCTAATGGACGGCGAGCAAGGAGATGATGTGGAGGAAAACatggattaaaaaatattacatcattaatcaattaaaagtaaaaatgataaaaaaaggaaaaaaaaaatctccacaACCGGACAAGCACCGGCTATTCCtctccccaacccc
>TU64136
CACAGTTACCTTACATGTAAAAATAGCACTTATAATTTATAGCGCATGAATCCGTGCAGTTCTGCTCTTAAGCCGACGATAACAGTACCATGATCCACAGATGAATGCACCGTTGTTTGTCCAAGAACTGAAGTCCTGCTTTTGTGTCCTCCATTTTGATCTCTCTCTGATTggactgtttttgttgtgtccccccccccccgttttGTCTGCAATTCCATTCATCCTCCAGTTCCTCAAGCTCTTCAGATGAAAAAGCGTCTCAAAAAGGTAAAGATGAGAACAAGGCGGATGGTGTGCGGCGGGAGAGAGGCCCCGCGAAGGGGCGGGGGGGTACAGCGGGTCCCGGGACAGGGAGGGGGCATGCCGACGCAGCGAACAGAGACCGGCGAAGGGAGGCAGACAGAAAAGACGGAAGAAGGGAACGAGACTGCAGACCAGCACCTGAGCCAAAGAAATTCGAGGAATCACCCAGTCCTAAATTCAGCTCCGCAAGTAAATACGCAGCCTTGCTAATGGACGGCGAGCAAGGAGATGATGTGGAGGAAAACatggattaaaaaatattacatcattaatcaattaaaagtaaaaatgataaaaaaaggaaaaaaaaaatctccacaACCGGACAAGCACCGGCTATTCCtctccccaacccc

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 4B-like isoform X4

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K03258 EIF4B; translation initiation factor 4B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008752 True 2217 mRNA 0.60 14 10828568 10846436
TU64133 False 526 lncRNA 0.43 3 10844381 10846286
TU64136 False 662 lncRNA 0.48 4 10844381 10846286

Neighbor

gene id symbol gene type direction distance location
AMCG00008753 NA coding upstream 24896 10797771 ~ 10803672 (+)
AMCG00008746 tmem106c,LOC107704621 coding upstream 203399 10618726 ~ 10625169 (+)
AMCG00008745 NA coding upstream 210403 10611383 ~ 10618165 (+)
AMCG00008742 LOC107709223 coding upstream 516471 10311582 ~ 10312097 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding upstream 543410 10276950 ~ 10285158 (+)
AMCG00008754 NA coding downstream 48606 10895042 ~ 10906610 (+)
AMCG00008755 NA coding downstream 64691 10911127 ~ 10929774 (+)
AMCG00008758 NA coding downstream 91803 10938239 ~ 10949947 (+)
AMCG00008757 NA coding downstream 103578 10950014 ~ 10950787 (+)
AMCG00008759 NA coding downstream 151134 10997570 ~ 11017498 (+)
G51252 NA non-coding upstream 24461 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 116083 10675565 ~ 10712485 (+)
G51220 NA non-coding upstream 154784 10609746 ~ 10673784 (+)
G51212 NA non-coding upstream 258632 10569710 ~ 10569936 (+)
G51211 NA non-coding upstream 260757 10566737 ~ 10567811 (+)
G51265 NA non-coding downstream 21499 10867935 ~ 10910645 (+)
G51283 NA non-coding downstream 104641 10951077 ~ 10953420 (+)
G51298 NA non-coding downstream 173780 11020216 ~ 11057436 (+)
G51446 NA non-coding downstream 619376 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 866276 11712712 ~ 11716482 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 56893 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 890816 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 897053 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1448989 9355092 ~ 9379579 (+)
AMCG00008710 NA other upstream 1512417 9310086 ~ 9316151 (+)
G51297 NA other downstream 138454 10984890 ~ 11040674 (+)
G51445 NA other downstream 613927 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 848218 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1693162 12539598 ~ 12549618 (+)
G51734 NA other downstream 1869058 12715494 ~ 12716786 (+)

Expression


Co-expression Network