AMCG00008754


Basic Information

Item Value
gene id AMCG00008754
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10895042 ~ 10906610 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008754
GTGTCGACAGCATGTGTCCCAGCGCCCCCCTCTGATCTGCAACGGCGTGGCACTGCTCCCTCTCGACACATCCAGCACCTGAGAACGACCTCATCTCTCATCTTCTTTCCCGCAGGGCTCCACGAAATCCCTGACCTACACCAAGCAAAGGAGCACCCTGCCCAGGAGGTGACCTCCATGCTGAAGTCCAAACATGAGGACAAGTTCCTGCTCTTCAACCTGTCAGAGAGGAGGCATGACATCTCCAGGCTGAACCCCAAGGTTCATGATTTTGGCTGGCCGGATCTCCATGCTCCCCCACTGGACAAAATCTGTGCCATCTGTAAAGCCATGGAGACCTggttgacctctgacccccaACATGTGGTGGTCCTGCACTGCAAGgGTAATAAAGGCAAAACAGGGGTGATCATCGCAGCTTACATGCACTACAGCAAGATCTCAGCAGGGGCAGACCAGGCCCTCAGCACTCTGGCTATGAGGAAGTTCTGTGAGGACAAGGTGGCATCCTCCCTGCAGCCCTCTCAGAACAGGTATATCTACTACTTTGGTGGTCTCCTGTCAGGGGCCATTAAGATGAACAGCAGCCCCCTGTTTCTGCACCAAGTCCTGATCCCCACACTGCCCAACTTCGAGCCTGGCGGAGGCTACTTCCCCTTCCTGAAGATTTATCAGTCCATGCAGTTGGTGTATACCTCAGGAATCTACAACCTGCAAGGCTCGGCGAGCCGGCGTCTGTGTGTCACCATTGAACCGGCGCTGCTGCTCAAAGGAGACATCCTGGTGAAATGCTACCATCGGCAGGTGAAGTCGGCAGACCACGATCGTTTCCCTGCCGACGCCACGGtggagtttgttttttcttctgggCCGGAGAAAATCAAAGGCCGGGAGTACCAGCGGAATGACGCCTCAGTCACGGTGGACTACAATACGGCTGACCCCATTGTGCGCTGGGACTCGTATGAGAACTTCAACCAGCGGCACCAGGACAGCCTGGAAGACATCGCCCACACACGAGGGCCCCTGGACGGCAGCCTCTATGCTCAGGTGAAGAAGCGGCGCGGCGCCGGCTCGCTCACCTCCAACGGCAGCCCGGGCAGCGGAGAGCACAGCCACCTCCTGTCCCTCAGCACCGACTCCGGCCACTCCTCTGCCCCCACCGAGCGCCTGGAGGAGCAGCCCCCCACCCGCCCTCCTGCACCCACCCGTGCCGAGAGGGAGGAGCTGGACCGCATGCTGGGGGGGATGGAGTCTCGGGGAGGGGGAGaccaggagagggagagagaccgGGAGAGGGAGACGGCCATCTTGGACGACGGAGAGCCCGAGAGGATGGGCTCTCTCCGGCTGGCACGCACCTGCTCCTGCCGCCTGGGATACCGCTCCCAGAGCTGCCGGGAGACAGCCTGCAACCGGCTGCCCAATGGCTACAGCCTGGAGCGCAATGGCCACCAGCCCAGCCACCTGGAGCTGTGCCAGCACCGCCTGGCGCCACCCGAGGTGCTGTGGGAGCGCCACCCCCAGCCCCTGCCCCCTTGCCTACACCGCTCCTGCTCCGAGGGACCTGGCCGCCACCTGTGCCCCTACCCTGCAGAGCTGCCACACACCCTGCCCCCGAGGCTGCTGTGCCGGGATGAGTTTACTTCCTAccacccccatccccatccACCTCCACCCTCTGGCCCCTACCGGGAGATGCTGATTCTGGACGGTCTGGCGCCCCCCCCAGCTTGTGCCTGCCGGGATTGCCATCTGCGCGAGGAGGCGGCCGCCGCCACCGCCTTCCACGCCCTGCGGCTCGACCGGGACCGTGACCGGGAAGCAGAGTTGCACTGGGAGACCGGGCACCACAGAGACCGGGAGGTGGAACTGAGACGAGGACGGGAGGCGGAGCTGCACTGGGAGGCCGGCATCCACCGAGACAGGGAAGCTGAGCTGAGGCGGGGCCGGGAGGTGGGGCTACACTGGGACAGGGACCGGGAGGCAGAGCTTTGCAGAGACAGGGAGGTGGAGCTGCAGAGGGAGTGGGAGGCagggctgcagagagagagggaggcagtgtTTTGGCACCGCAGGGCCGTGTCGCCACCCAGATCGGGGCATGGGCCACAGTCTGCTCCTTTACCACTCCAGTCCGACCCCTACGGCCCTCGGCACTCCCCACAGGGCCACGAGGTCCCCGCCTTCACCTTTGACCCCCTACCCTCAGGCCACCCAGCCTACCCAGAGGCCTCGGCCACTCGcatccacccccacccccactcggCCCCCTGCATAGACCTGaagtacagcagcagcagcagtgggtACCAGACCCCGCGGCAGGCCTGCGCTTGCTCTCCCTACCAGCCTTCTCCTGCAACCCGCAGCCTGTCGCCCTCCGAGAGCCGGGGTTACGCCTCGGGGTACCAGTCCGAGTCCACCTCCCCCCTGCCTCCTTCCATCAGGACCCCCGGCCCCCCAGAGAGCCTCACTCCCACCCAGGGTCACCCAGCTGCTCCTCTCGACTTCCAGCACATCACCGCCCAGGAGAGTGCGGACCTGCAGAGAGCCGtgGACAGTGGCGGGGGGCCCGGAGGTGGTAGCGTGACCTGGCGTGACCACATGGCCCTGGGTTCCTTGCGCCGGATGCATCGCGAAGCCCGTATCATCTGCTCCATGCCCTCTGACCACTCAGGGCCACCCACCCCGGTGCATACCAGCAGCCCACTGCGCACCCAGGACAGCCCCAGTCCAGCAGAGACGGCCCCCCAAGACCTGAATCTTCACGTgacagaggtggggggggcCATGAACACCGTCCCAGAAGCTGCCCCGCAGGACAGGAACTGTAGGGACCACGTGGAGCTCCGCCCCCTGTGCCAGGGACCACACGATTGCCCGCCAAACTCTTCAGCACCAGGCAGCCCCCTGCCCGGCCCTGCTGCCCAGTCTGACACAGAcgctcccccccctctctcccccagggGATCACCAACCAAAGCCACCCCAgagccccacacacacactctccccgCCGGCTCCCACAGCCCCACTCCCCAGCCCAGCAACGGCCAGACCCACTGCTGGAAGCGCCAGGCCCCGCTGCCCCCGGCAGCAGCAGAGGGCAGCCCATCTTTCCAGGGGGGGTCCAGCAACAGTAACAGTAGCAATAGCAGCAGCCCCTCCCGGGAGCCCCCAATACTCTCCTCCTTCGCCCACGCCTCGGCCGCTCAGaactctcctctcccctcccacAGGCCCCCTCAACCCGGCTCCCCGGGGCTGGTGCAGCTCAATGGCTCCACTTACCAAGGGGAGAGGAGCACGGAGGAGAAGGCCAGGGTGGGCACTCCCAACGGTGGCCCAGTCCCTGCTCACCTCACCCCTCCGTCCCCGCTCTCGTCTGGCCCCGGCAGCCCAGACAGGTCTCCCTCCGCTGAGCCGCCCGTCCCAGGATTCGCCACCCTGGGCCGCCGGCTGATGCTAGGCACCGAGAGTGGGCATCTGCACCCCAACCTGGAGACGGGAGGGTGCATACCGTCCCCGTCCCCTGAAGGCCACGCCACCCCCTCCTTCCCCATCTCCACTTACTACTACAGCGGGCACACGcccacccccacacccaccCCGGGACACTACACCGGCTACACCGCCGTCACCATCCCCCCGCCAGACGCCCAGCCTCCTCTGCCGGAGAAGAGGCGTCTGTCCTCCCTGCCCGAGCGCTCGCACGGCCTCAACTCGCCCAATGGCCGCTCCTCTGCCCTGCGCAGCCCCACCGCCCCCGGCGCCGCCAACCCTGGGCACCACGTCACCTTCTCACCCGGCCTGGGGGAGGGGCAGCCCACTGTCCTGCCCATcgagggggagggggacagcAGGGTGAACGCCAAGTTCGTGCAGGACACCTCCAGGTTCTGGTACAAGCCCGGCATTTCCAGGGACCAAGCCATCTCTGTACTGAAGGAGAAGGAGCCGGGCGCCTTCCTGATTCGGGACAGTAACTCCTTCCACGGGGCCTATGGGCTGGCCCTCAAGGTGGCCACACCCCCTCCCAACGTCAACACTCACAACAGCAAAGGGGACCCCCTGGAGCAGCTGGAAGTGAGCAGCACCAGCAACATGAGCACCGCAGCTGACCTGCTCAAACAGGGCGCAGCCTGCAACGTGCTGTACCTGAATTCCGTGGAGACCGAGTCCCTGACGGGCCCCCAGGCTGTTACCAAGGCGACCAGTGCCACCCTGACCCGCAGTCCGCGCCCCCTCGCCACTGTGGTCCACTTCAAAgGTATTCTTCAGGAGACACTACCCTTTAAACAGTGTAACGTTCAGCAATGTGGACCCCCAGGACAGGAGGTGGACAAATCCAGACGGAACGACATCCAAGTAAGTCCCGCCACCCACAGCTCCCCACGGCCTGCCCGGGTGTTTGGCTTCGTCGCGAAAAAGCAGGGCAGCGTGTCGGAGAACGTGTGCCACCTGTTCGCTGAGCTGGATCCCGAGCAGCCCGCCTCTGCCATCGTCAACTTCATCAACAAAGTCATGCTGGGCCCCCATCGCCGGTAGAGGCtcggaggggggtggggggggtgtttacaggagagagaagggaga

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008754 True 4599 mRNA 0.65 24 10895042 10906610

Neighbor

gene id symbol gene type direction distance location
AMCG00008753 NA coding upstream 91370 10797771 ~ 10803672 (+)
AMCG00008746 tmem106c,LOC107704621 coding upstream 269873 10618726 ~ 10625169 (+)
AMCG00008745 NA coding upstream 276877 10611383 ~ 10618165 (+)
AMCG00008742 LOC107709223 coding upstream 582945 10311582 ~ 10312097 (+)
AMCG00008737 slc48a1,LOC106567162,LOC106572510,LOC105022284 coding upstream 609884 10276950 ~ 10285158 (+)
AMCG00008755 NA coding downstream 4517 10911127 ~ 10929774 (+)
AMCG00008758 NA coding downstream 31629 10938239 ~ 10949947 (+)
AMCG00008757 NA coding downstream 43404 10950014 ~ 10950787 (+)
AMCG00008759 NA coding downstream 90960 10997570 ~ 11017498 (+)
AMCG00008760 NA coding downstream 146132 11052742 ~ 11061279 (+)
G51252 NA non-coding upstream 90935 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 182557 10675565 ~ 10712485 (+)
G51220 NA non-coding upstream 221258 10609746 ~ 10673784 (+)
G51212 NA non-coding upstream 325106 10569710 ~ 10569936 (+)
G51211 NA non-coding upstream 327231 10566737 ~ 10567811 (+)
G51283 NA non-coding downstream 44467 10951077 ~ 10953420 (+)
G51298 NA non-coding downstream 113606 11020216 ~ 11057436 (+)
G51446 NA non-coding downstream 559202 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 806102 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 1155464 12062074 ~ 12062289 (+)
AMCG00008752 LOC107666323 other upstream 48606 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 123367 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 957290 9915494 ~ 9937752 (+)
AMCG00008727 NA other upstream 963527 9927387 ~ 9931515 (+)
AMCG00008707 tfcp2,LOC107715039,LOC107671887,LOC106572516 other upstream 1515463 9355092 ~ 9379579 (+)
G51297 NA other downstream 78280 10984890 ~ 11040674 (+)
G51445 NA other downstream 553753 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 788044 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1632988 12539598 ~ 12549618 (+)
G51734 NA other downstream 1808884 12715494 ~ 12716786 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G54834 NA unknown NC_053116.1 CM020913.1 32880193 ~ 32887290 (-)
tiger barb (Puntius tetrazona) G49440 ctsla,LOC107755730,LOC107680563,LOC107557611,LOC107558029,LOC107727441 non-coding NC_056705.1 CM032074.1 2494015 ~ 2497899 (-)