AMCG00008770


Basic Information

Item Value
gene id AMCG00008770
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11183217 ~ 11189156 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008770
TTCTGCGTGTGTCGCCAGGTCACTCTTCCCCCGGGGCCCCTGTACCGCGTGGCTGGATTCCCCCTGTCCCTGCCCTGCATTGTGTCAGGATACGAGGGCTCCCGGACGCAGGATTTCGAGTGGTTCCTGTACCGAGATGATGCGGGGGGGCGGCAGATGGGCGTGATCTCCACACGGGACAGAGAGTTCCCGTATGCCCCCTTCCAGCCCCGGGTGCGCTCCGGGGAGGTGCGCGTGGAGCGGGACAGCGGGGACCGAGTGCGGCTGGTAATCCAGAGGCTGAGGCCGGAGGACCAGGGGAGTTTTGAGTGCTACACGCCTAGCACCGACTCCCGCTTCCAAGGCAACTATAGCGCCACTGTGGTGGTCAAAGTGATGCCCGACACCCTGCAAATCAGACACACCGCGTCCCGCTCCTTGGGTGGCCAGTCCCTGACCGAGGGGGCAGAGCTGGAACTGACGTGTGCCGCCGCCATCCAATCGCAGCAGCACACTCACCTGTCAATCACCTTTGGGGTGCGGGGAGGGGCAGGGACCGGGGGGAGGGGCCACAACCTGCGGGAGATAATTTCCATTGGCCGGGATCTGGGCGTGGCGACGGGGAAAGGCGGGGACTACGAAGGGCGGTATGCGGACGGGATCGTTTCATTGGAGAAGAGGAGCGGGAAGAACCAAGGGGATCCTGACCTGTATGTGATGAGGATTGGGTCGGTGGCTCCGGGGGACACTGGGTCCTATTTCTGCGAGGTGGCCCAGTGGATTCTGGACCCCCAAGGAGACTGGGAGAAAATCGCCCAGAGGACCTTGGAGCTTGGCAACATCACCGTCCAGCCCTTAGCGGACACCCTGGCAGTGAAAGTGTTGCCCGAGGTGGAGGTCGTACTCTCGGCGGGGTCCCCTCTCGGCCTGACCTGTGACGTGGGTGGGATCAGCCCATCTTCCCGCCCCTCCCTGCTGGTCCAATGGCTGCGGAGGGCAGTGGGCGGGGGGGCGGAAGTGGAGGTGGCCCGCATGGGGTCGGATGGGGTCGTGACCTGGGGCGATGATGTCAGCAGGAGAGGAGGGGCCTCCCTGGAGAAGGAGGCGGAGGGGCGGTACTCCCTGCGGCTCTTCTCGGCCCACCCCGCCGACTCGGGGGTCTACCGATGCGCTGTGAGCGTCTACACCGGCCCCACCCCCGGGGCGGGCAGCCCGGCCGCCAGCCAGAGGTCAAAAGGGGTCAATGTCAACCTGAAGACAAAAGAAGTAAAGGTCACAGCAGAGGCAGGGCTGAACCCGGGGCCACTCCTCCAACGCGGCCACACCCTCTCACTGCTGTGCAACGTCTCCGTGCTGACAGCCGGCCCCACCCAGGTGGAGGTGCTGTGGCTGGTGATGggggaggcagagggggagggCGAGAGGCCTGCCGAGCCCAGGCTGCTGGCTGTGCTGATGCATGACGGTACCTCCCATCTCTATAGCAACGACAGCAATGTCAGCGTGGACCGGCTGTCCTCCAGCTCCTACAGGCTGAGGATCCATGGAGTGGAGGTGGACGACCAGGGCCTCTACCACTGCCAGGCCAAGGTGTGGGGGCAGGACCCACACGGGGGCTGGTACAACACTGGGGCACGCTCCGTATCCAGGCCTGTGCGCGTGTACATGTATTCTCGAGctAGCGACCTCCTCCTCATCCCCCTGGTTGTGGGCGTGTCTTCAGCTCTCTTTGTGGGCATCACCATCGTCGCCGCAGTGACCTGCTGTTTCATGAACCGCTTGGCTAGGCAGCGCTCTCAAAAATAAGGAAGTGAACAAAACCAGCTGCAGGTGGACGGGAGGGAAGAATGGAGATGAGGAAgcatggggggtggggaggagagGGTGTTCACCCGTAACAAacgcaacaaacaaacaaaaaccttcaCTTCTACACAGCTGCGCCTCACCCTGAGATTCCCAGAGGAATTGTGGGGAATTCTCTAGACGTGACCAATGCGGGGATTCTGACATGCCTGTTAGAACATAGCAGGCTTTCTGTATCTGTTTGTCACACTCCATCATATTGCAGCTGCACCGAAGGGATCCAGTCTGAATTGTGAGAATCTGAAAAGTCTGCACTAAAGATCAACATTCGGACTTTGACTTGGGTCTCATTTCAGGTTAAGGCACAGAGCTCAGCTCCCAGACTGTAaactgctgcacacacacatcaaatcTGTACACTGGAGAAGTGGTTTAACCTGGGCTGACCTTTGACCAAAGTCTTGAGGACCTCCTCTATGTTCGATGTCATTCGGGACCTGTTTCAagcctcccccacacacacacacacaataatgagCCAGTACAGCtctttttgtattctatttatttgttttttgctgtaaTCCTGccatgtgtaaaacaaaaatacatttgtataactGCACTTTTACACAAGGGAGAAACCACTAGTAACTGTTTAGCTAGTAACTTACCCCCAGCTCCCAGATGCACTGTTTGCACCGTATGACCACAATTCAGCAGGTACAGAGCACTGCTATGGAAGTTTGCATGTTGCAGACCATGCCTAAGCTATGAATGCATTTCAAGCATTGCTCCACAGAATGCCaagccaaaaaaagaaaatgaaagaaagcctTTTCTTCTATAACACTTCAAACATATCCTATCTCGCATTTGCTTCTCCTGTGAGGAGAGCATTGGCTGCAAACTTCTCTGGCTGacttcaaagcattacaatgCTGAATAATGTATGAGTATGACTCAAGTGAAtatggcgtgtgtgtgtgtgtgtagaaagaGTCCCGGGGAAACATTCATTCAGTAGTGGACTGACAAAGTCTTAAGATGATAATATACATAGGCATTGTGTCTTTAAATTACTTTAGTATAATATCCTGTACACTTTCTCCTCTGCCACGGTCGCCTATGCAGTGGAATTTAAATGTAGCTCCAGATCACATGATGGCTCCTCCTCCCCAAGCAGTGCCGCCTCCCAGTCTCGTGATTTCAGACActgttcaaaaaataaatacattctgagtAGGGCAAAGTTCATGCTGGGTATTGATTTACTTGTCCTGTACTCTCCAGCCTGTAGTCTTAACCTCTGAAGCagttctgattttttttaattcgaCATGGATGTCACTGAGAATGTCTGTCTGAACCTCATTATCTTGTATAGTTTCAAAaatatcagtagtagtagttagttttttttcttttcttcttagTCTTTAATTAAGAGAAGGCCAGTATTACTGAATAAGCCGAGATACTGTCTTTAAACTGAGTTCGTCGTAATTTCTGatttcctgatttatttattttttgctgtaaaGGCTCATCCTGTTCGATGTTCTGATATTCATGCTGTGTTTCCCctgtgctttcaaaacaaaacaaacaaaaaaattatataaagaaaatataaaaaataaagataaaaaattCTGGCCTGGGGATTAGGTCTTTTCAAATACTTCCGCGTACTGTGACATTGGAAGCtgcagctggaaaaaaaaaagagagttTAAGAGTCACTAGGGGAACATTATTTCAATGTcccatattttaaaatggcaatgttaATCCAGGACCTATGTTCTCCCCACTCTAGAAATTCCAGTCTGCCCGTTTTCGCAGTAATgtagagctctctctctctctgccccaaaAACCTGATTTAGCCAATGCGACACAATGCCGGTAGAAGCAAGTGGGCCGGGGAACACAAATTGATGGGTCTGAGATGACGCCATCTGTGGTTGGACTAATCTCGCTCTcctctcagaaaaaaaaacaggaaaagccATACCAGTCTCCTATTGTTTCAGCATCAACACAAATGACTGTTTTCAGTGCATTGCAGAAAGAGGATCTCACAGTACAGGCTTGAACAAAGGAACTCTgttctaaaaactaaaaactgatgTACATTAACTTATCTGCAAGGCATTAGGCCTACGTCAGAGTAAGGAAGGGTGCTTACTGTaactcatttgtttttcaatgttgaCGACACTTCTGGATGACCAAGTGGTTTGAGGGCGTCCCAGCACACAGTTTGTAGATGCCTCACTCTCCCATTGTGATGTCACTGTAATTGCtgatctttttttaaaatattttataaatgtatatacatattttaaaaaaggttaCATGCGGGTCCAAAATGTGTTGTTGTCCAAACTTGTTACAGCACTATATTGTGATAAACTGTCATTTTTGTAtgcaattgtaaaaaaaacaaaagtatgatcaccccccccc

Function

GO: NA

KEGG:

id description
K06730 IGSF8, CD316; immunoglobulin superfamily, member 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008770 True 4263 mRNA 0.51 5 11183217 11189156

Neighbor

gene id symbol gene type direction distance location
AMCG00008769 NA coding upstream 30654 11144022 ~ 11152563 (+)
AMCG00008768 NA coding upstream 61058 11115024 ~ 11122159 (+)
AMCG00008760 NA coding upstream 121938 11052742 ~ 11061279 (+)
AMCG00008759 NA coding upstream 165719 10997570 ~ 11017498 (+)
AMCG00008757 NA coding upstream 232430 10950014 ~ 10950787 (+)
AMCG00008771 NA coding downstream 266 11189422 ~ 11197752 (+)
AMCG00008774 LOC106566145,LOC107558166 coding downstream 90756 11279912 ~ 11291300 (+)
AMCG00008775 NA coding downstream 142719 11331875 ~ 11336221 (+)
AMCG00008778 NA coding downstream 180557 11369713 ~ 11392029 (+)
AMCG00008783 r3hdm2 coding downstream 378702 11567858 ~ 11599637 (+)
G51298 NA non-coding upstream 125781 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 229797 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 272572 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 379110 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 470732 10675565 ~ 10712485 (+)
G51446 NA non-coding downstream 276656 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 523556 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 872918 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 886332 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 889541 12078697 ~ 12080204 (+)
G51297 NA other upstream 142543 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 336781 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 411542 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1245465 9915494 ~ 9937752 (+)
G51445 NA other downstream 271207 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 505498 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1350442 12539598 ~ 12549618 (+)
G51734 NA other downstream 1526338 12715494 ~ 12716786 (+)
G51756 NA other downstream 1653559 12842715 ~ 12846233 (+)

Expression


Co-expression Network