AMCG00008771


Basic Information

Item Value
gene id AMCG00008771
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11189422 ~ 11197752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008771
CTGgtcaacaaaaacacaagccaTTTTCCCAGTGTATTCATATAGATGTCAATGCCAATTTATTCGCAATGTCCGAAACTTTTTACAGTTGGAAAAAAGTGGTTTGACATGCATTTGTTAATCTCTTTGCATGACCTTTATTATGATATTTAttaggcctattattattattctgttaagTATAATGATCAGTATTTCATTCTGACCTTGTACCATGGTATAACCAACAGGTGCGGTGGTGGTATTGTACTTTAAATTCTTTATCTTTGCTGAAGATCCTCCCATAGGGAGCAGCAGTTTGTACTGACACCAAAAGTTAATCATCACAAACAGCTTcgattgtatatataataaaataaccatCAAATACACAACCTCTGCCAATTCCCTAATTACCCTCCACTTGGTTTACACTGACTAGAACAATACACTGATTCTAGTACAATCTAATATATTAGAGCAcagtgtattatttaaataatattgatgtATAACAGGCATTTCACAGAAACATGCAACAACTACCtttgaaataacatgaatgcgTTTTGGCTGTCCCCTATGACACGTTTTGTACTGTAGGATGCTTTGCTCCTGTAGGACCTTTTGTGttccttattttatatttttttgccttaGTCTTGCtccattatacattttcttgattGCATATGATACTTTTAGGTTGCTGACCAGTGCTGTTAATAAAGATAACTACTTTTTGCAGGGTAGGTTTGCCTCAGTGCCAGTTGGAGATTCAATAGTGCAGTgatacaaacacagaatgtgttgTGTATCAAATTTCAGTAAAACGTGGTTTCAGCAATCAACGTGTGCCTTTCTCTTCAGTAAAAGGTAACATATACAATATTGTCCCAGTATGATGCTGTCCTGTACAACACTGTGTAATAGTATATTAAAGGGTCTTGTTATGTAAAACATGGCTTAATTATGCTTGGGCTCTATTTCccgtgtatattattattatgatgatgatgatggatgAACAAAATTCTGTCCCTACCTACTGAATTTGTAATATAGACAACTAACAGGATGTAAACGCACATTTATGCACACACAATATTAACCTCTCCAATAAACGTGGATTATGGCGTCCACCATTTGTGACGTAATAGTTGAGACGTGTTACACCTTACGGCTCAGTCCCAGTCACTCGGCTCAGTTTCCCTAAGCTACAGCTCGTTTATTTAAAAGCCTAAAAACAAACTATCTATACAACTTCACAGATACAGACCAATGTAGAAACGGATGCCCTGAGCGATATGGATGTGGAAAAAGCACTTCGGTGCTCCACGATCGACATCCCGCTCTCGGTGGAAGCGGCCATGAGCCACTTGCAAACCACCGAGCTGCAACGAGCCAAAAAGGACGTGAGTGAGAGTCTTTGTGCCATCCTGAGGAACGTCAACCTGGCGCTGCACCATATGCAGCTGGGCTTGGACGTGGAGATGCCCGACTCCGGCGGAGGGGACATGATGCGTGCCCAGCAGCTGCATAACATTGACATCTTCCTGCAGTCCAGCTACAGCAAGGAGTCCGACCTCAGTCACATCCTGAATTGGCTGAGCGAGGCCGGTCAGGACCTtcaggaggtggaggaggacgaggacTTTAAAGAAGTAGCCAAGATCACGATTGAGTGGGTGAAGGAGATGGAGGACAATGTCAATAGGTCCTTCGACTCCTCTCAGCAGTGTATCCACAAGCTGCAACGGATCTGCACACTGCTACACACTTACTACCTGGAAACTAAGAGAAAGAAGAAGCAACCAGCAGAGGTCCATAAGGATGGTGTCTGGCGGTGGTGGCGGGAGGGAAAAGCGAACAACAAAATGCTGAAGAAGATCCAGGAGCTGCAGCCGCCCAGTGAGGAGCAATTGCGGCAGGACCCCAACCTCAACATCAAAGTGGCGACAGAGCTGTGCTTCATGCTCTCAGACATTGCCACGTTCTTGGCCTGCAACAAGGCCCTGAGCCTGGGATTCATCTTCATACAGAATGGTATTCAGAACCTCAACAGGGCCTTCCAGGAGCGCACCAAGGAGTGCCTGGAGCTCAAAGCCAAGCTGGAGGCCAGACAGTCCATCACCTTGAAGAAGCGTAATCAGGACATTCTGAATGTTGAGGCGGAGGATCTGAGGAAGAAGAACAGCGAGCTTCAAATTCAACTGGCGGACACTAATAAGAAGTACACTGCCCTGCTGGTGGAGATGGAGAGGCTGCAGCAGGTTCGCCACGTGGTGACCAAATTTACCCCATCGGTTCCCTCCTTGAAGGAGATCCCAGTGATCGCtgtggagaaggaggaggcCCAGAAGAAAGAGATGCCTGTGGAGGCCGTAGGCATTCACACACAGCTGGAACCGGAGGAGGAACAGGAAGCGATCAGAAATGAGAGAGTTGCCACCCTGGAGGAGGAGTCGCCCTCTACTGAAGATGAAGGGAGCACCTTTGCCTGTGAGGTGCTTCCCACAAAGGTGGTGGGCTCTTGGGAGGGCAGCCCTCAGAACCCTGGTGACTTCCTGGAGGAGAGCAGCAAGATGTTTAATGCCCAGGAGAGGTCCATTGAGGAGTGCTCAGGCAAGATGAGGTCTCTTGCCAGCCTGGACGACAGGAAAACACCCACAATGTACCTGCACCACGTGGACAACCAGCGGGAGATGCACCAGCAAATGGGGCCCCAGCCCAAAAAGCCAGAAGCAGCAGTGGAGGTAATTCCCCGTGAGGTGCTTCCAATAAAGGCAGAGGGCTCTTGGGAGGGCAGCCCTCAGAACCCTGGGAACTTCCTCGAGGACAGCAGCAAGATGTTTCATGCCAAGGAGAGGTCCACTGAGGAGTGCTCAGGCATGATGAGGTCTCTTGCCGGCCTGGACGGCAGGAAAACACCCAAAACGGACCTGCGCCACATGGACAGCCGGCGGGAGATGCACCAGCAAATGGGGCCCCAGCCCAAAAAGCCAGAGGCAGTGGTAGAGGTGGCCAGGGTTCCAGTTGAGAAGCACAAGCCTGAAGAACTAAGAAGCACCACAGTATTGGAGCGGAAAGAATACAACCCTGTGGGATGTACTCGCAAGGAAGCTCCACTCCCCAAGAGGAAGGTCCAGGgtccaagggggggggggtgcctGATAGAGGATGTCACGCACTACGAGGTGGAGATGTGCAAGGAGGCTGAGACTCTCCTGAAGACCGAGATGGCTGGTGTGACCTACATAATCGATGTGGAATCTCAGCAGATTAATCACAGGCTCCTGCAGCAGGCATTGTTCAGAGGAGATATCTCCCAACAGCTGTACGATTTGGTCAACAGACTGATCACCCAGACTCTGAGCACCGACGAACTAAGGCTGGCCTGCCTcttaagaaaatacatcagtTACTGTTGTTTAATGCAAAGCCGGCGTAACCTATTGGCCAAGTTAGATTCAGCCAGGGACATCCATGACGGGAAGTTGGAGAGAGACCTGTACTCCTACCTGAAGAAGCTGGAGGTCTACCATCATGCAGTTATGCAGCGTTGGGAGACCAAACAAGCTGCCGTGAAAGAGATGCTGAGAACCTGCTTCGCCAAGATGCTGTACCTGTTCAGCCAGATAAAGAAGGACGCCAATCTGAACTTGGTCAGCCCATACCCCAGCAAAAAGGCCCAACGGGTTCATCCAGAGCACATCCTATTCCATCCGGGGCCCAGGAAGCTGGTGGTGACCCCCAGCTCCATGAGACCATCTGGCTTGACCCAGCCCCCGTCTCGTCCCCGTTATCAGCCTCACCTGGGCCTCCTAGGGCCCGTTGTTGGAACCAGGAAGCCGCGGCTGGGGGGTGAGCTGACAGCCTTGTGGACCTGCGATGTCACAGTGAAGAGTGAGGCCTTGGCGCCAAAGAATCCGTTGTCTACGGCGCTGACCCCCCCCTGCATCCCCCGCCTACTGGAGCTGGACATCTCACAGGGCGGTAATATAGCGCAGCGGTTGCTGATGGCAGGTAAGCCTTCCCTGCCGTGGTCCACAACGCAGCAGTGGAAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008771 True 4049 mRNA 0.49 7 11189422 11197752

Neighbor

gene id symbol gene type direction distance location
AMCG00008770 NA coding upstream 266 11183217 ~ 11189156 (+)
AMCG00008769 NA coding upstream 36859 11144022 ~ 11152563 (+)
AMCG00008768 NA coding upstream 67263 11115024 ~ 11122159 (+)
AMCG00008760 NA coding upstream 128143 11052742 ~ 11061279 (+)
AMCG00008759 NA coding upstream 171924 10997570 ~ 11017498 (+)
AMCG00008774 LOC106566145,LOC107558166 coding downstream 82160 11279912 ~ 11291300 (+)
AMCG00008775 NA coding downstream 134123 11331875 ~ 11336221 (+)
AMCG00008778 NA coding downstream 171961 11369713 ~ 11392029 (+)
AMCG00008783 r3hdm2 coding downstream 370106 11567858 ~ 11599637 (+)
AMCG00008782 LOC107563942 coding downstream 404663 11602415 ~ 11618855 (+)
G51298 NA non-coding upstream 131986 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 236002 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 278777 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 385315 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 476937 10675565 ~ 10712485 (+)
G51446 NA non-coding downstream 268060 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 514960 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 864322 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 877736 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 880945 12078697 ~ 12080204 (+)
G51297 NA other upstream 148748 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 342986 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 417747 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1251670 9915494 ~ 9937752 (+)
G51445 NA other downstream 262611 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 496902 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1341846 12539598 ~ 12549618 (+)
G51734 NA other downstream 1517742 12715494 ~ 12716786 (+)
G51756 NA other downstream 1644963 12842715 ~ 12846233 (+)

Expression


Co-expression Network