AMCG00008774 (LOC106566145,LOC107558166)



Basic Information


Item Value
gene id AMCG00008774
gene name LOC106566145,LOC107558166
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11279912 ~ 11291300 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00008774
CCAAACAAATCTCACTCTCGCTCGACGCGACGGAAGTTCACGCGAGATCGCCGGCTTCTCGCCCTTTGGCAAGCGCAGGGACTGTCAAATCCGGGCAATAATTGAAATCTAATCGTGACTAAACGACAATATTTTTAGGTAACACATCTCAGACCcgatatttattgattgattttgcaCAGAAACAGCGGATCAGAGGCCACGGCAAACCTCTTCCCATCCTCGCTTCCTGAGAGCTGCAGCTTCAACAACAATGGCGGATCCCAAGTATGCCAATTTGCCAGGCATTGCCTCCAATGAGCCTGATGTGTACGAGACCAGCGACCTCCCGGAAGATGACCAGGCTCAGTTTGAGTCGGAGGAGCTGTGCAGTGACAGCGTGGAGAGGATCGTGGTGAACCCCAATGCAGCCTACGACAAATTCAAAGACAAGAGAGTCAGCACCAAGGGCCTGGaTTTCTCGGATCGCATCAGTAAGACCAGGCGGATCGGCTACGAGTCCGGGGAGTATGAGATACTGGCAGAGGGCTGTGGTGTGAAGGAGACCCCCCAGCAGAAATACCAACGGCTGGTGAATGAGATCCAGGAACTGACGGAAGAGGTGGACCAGAtaaagacCAGCACTAAGGAGTCCAGCAGTGAGGAGCGGTTGACCCCGGCCGCCCTGGCGCAGCAGGCCGCTAAGCTGAAGCAGCAGCTGGTGGCATCTCACCTGGAGAGCATGCTGGGACCCCATGCCCACATCGCCCTCACCGACCCTGACGGAGCACTGGCACAGCGGCTGCTGACCCAGCTGGAGGTGGTGCGGGgccggggggccggggggcggTCGGCGGAGGTGGGGAAGGCGGGGGTGAAGGGGCCGGACGGGGTGGTGGTGTATGAGCTGCACAGCCGCCCAGAGCAGGACCACTTCACAGAGGCTGCCAAGaTTTCGGAGCTGGAGAAGCGCCTAGCAGAGCTGGAGACGGCAATGGGCTCTGGTGGCCCCGAGAGACAGAGTCCCCTGACCACAGGAGTGCAGGGAAGCAGTCTGGTGgaCACTATCGAGCTCCTGCAGGCCCGTGTCAGCGCTCTGGACTCAGCCACACTGGACCAGGTGGAGGCGAGACTGCAg

Function


NR:

description
PREDICTED: dynactin subunit 2-like isoform X3

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005869 dynactin complex cellular_component

KEGG:

id description
K10424 DCTN2; dynactin 2

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00008774 True 1117 mRNA 0.59 10 11279912 11291300

Neighbor


gene id symbol gene type direction distance location
AMCG00008771 NA coding upstream 82160 11189422 ~ 11197752 (+)
AMCG00008770 NA coding upstream 90756 11183217 ~ 11189156 (+)
AMCG00008769 NA coding upstream 127349 11144022 ~ 11152563 (+)
AMCG00008768 NA coding upstream 157753 11115024 ~ 11122159 (+)
AMCG00008760 NA coding upstream 218633 11052742 ~ 11061279 (+)
AMCG00008775 NA coding downstream 40575 11331875 ~ 11336221 (+)
AMCG00008778 NA coding downstream 78413 11369713 ~ 11392029 (+)
AMCG00008783 r3hdm2 coding downstream 276558 11567858 ~ 11599637 (+)
AMCG00008782 LOC107563942 coding downstream 311115 11602415 ~ 11618855 (+)
AMCG00008787 NA coding downstream 541986 11833286 ~ 11834344 (+)
G51298 NA non-coding upstream 222476 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 326492 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 369267 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 475805 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 567427 10675565 ~ 10712485 (+)
G51446 NA non-coding downstream 174512 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 421412 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 770774 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 784188 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 787397 12078697 ~ 12080204 (+)
G51297 NA other upstream 239238 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 433476 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 508237 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1342160 9915494 ~ 9937752 (+)
G51445 NA other downstream 169063 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 403354 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1248298 12539598 ~ 12549618 (+)
G51734 NA other downstream 1424194 12715494 ~ 12716786 (+)
G51756 NA other downstream 1551415 12842715 ~ 12846233 (+)

Expression



Co-expression Network