AMCG00008776


Basic Information

Item Value
gene id AMCG00008776
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11335776 ~ 11348560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008776
GGGTTAAGTAGCCGGTTTGTCGCGTGTTGTTTCGATAAGGTTCTGGTGCATGAGTTTGGAGCTGTAGCTTTTATTGATTAATGTcgttttcttaaaaaacagaagaccGTGAAAGAAATGAACGTAAAGATGACACTGTACGTCAGCGAGGGTAATCCGCACAGTCTGAAAGTACTGGCGGCGAATGAAATGACAGGGGTGAAATGTGACATAAAGTATGTCAATCACGACGAGAGAGTGGTGCCCTTCCTGAGCCGCCCCACAGTGCCAGCCCTGCGGCTCAGCTCTGGAAACTACCTGTTCTCCGCCAACGCCATCTGCCAGTACCTGTTCACACTCGGCGGACTGGAGCCCAGCGATGCGACCAATCAGTGGCTGGAGTGGGAGGGAACAGAACTCCAGCCCGCCGTGACCTTGGCACTCCATTTAGCAGCGCTGCAGGGGAAGAGGGCTGAAGCAGCACGGTCCCTTCAGAAACACCTGAGCTACCTGGACCAGAGACTGGCCAAGAGAGGAGCCCCCTACGTCACTTCGGAAGTGATGACAGTAGCTGATGTCGTCCTATGGGGGGCTCTGTACCCATTCCTCTCTGATGCCACTCTACTTCCTGGGGGGCTGCAGGCAGTGACAGGCTGGTTTGAGCGAGTCGGGGGGCATGCAGCTTGTAAGGCTGCAGCCCAGTCCATCCTGAAGGGAGGGGGACTCTCGACCCTGAAACCCTATCTACAGAGACAGCCGCCCCCCCGGCAGCGTAGTGAGAGACCTGCCAGCAACGAGCCAGAGGGGGAGAACGCGGAGCACACAATGACGGAGAAGGAGATCCAGGCGGACGTGGAGATCTGGAGTAAGGGCCTGTCCGCTTGTCCCAAGCCCAAGGAGATCCAGCACCCCATCCTGCCTCGGGAGGGGGAAAGAAACGTGCTGATCACCAGTGCCCTGCCCTACGTCAACAACGTACCTCACCTGGGGAACATCATCGGTTGCGTGCTGAGTGCGGATGTGTTTGCCAGGTTCTGCCGTCTGCGGGGCTTGACCACGCTGTTCGTGTGCGGGACGGACGAGTACGGGACGGCCACGGAGAACAAGGCGGCGGAGGAGGGGGTGTCACCGCGGGAGATCTGCGACAAGTACCACACTGTGCACGCCAACATCTACCGCTGGTTCAACATCAGCTTTGACTACTTCGGCAGGACCACCACGCCCCGGCAGACTGAGATTGCCCAGGACATCTTCGGGCGGCTGCTGGAGCGGGACTTCCTGCTGCCCGACACGGTGGAGCAGCTGCGGTGCGAGCACTGTGACCGCTTCCTGGCTGACCGCTTCGTGGAGGGCGTCTGTCCCTTCTGCTGCTACGAGGAGGCGCGGGGGGACCAGTGTGACAAGTGTGGCAAACTCATCAATGCCGTGGAGCTCAAGCTGGAGTCCCGTCTGGAGACGTGGCTGGAGAAGTCGGTCGGCACGGGCGACTGGACGCCCAACGCGCGCTTCATCACTCGCACCTGGATCCGCGACGGGCTGAAGCCACGCTGCATCACCCGCGACCTCAAGTGGGGCACCCCCGTGTTCTATGTGTGGTTCGACGCTCCCATTGGCTACCTGTCCATCACCGCCAATTACACCGACCAATGGGAGAAATGGTGGAAGAATCCAGAGCAGGTGCAGCTGTATAACTTCATGGCCAAAGACAACGTGCCCTTCCACAGCGTGGGCCAGGACAGCACCTTCTCCTGGGCCGACATGGCGCTGAAGAACAACTCCGAACTGCTCAACAACCTGGGCAACTTCATCAACAGGATCCGTGATGCTCTGAAATGCATCCTGAACATCTCTCGCCATGGCAACCAGCAGCGGACAGGCACAGTGACGGGGGTGGCAGTGAACCTGGCCTGTCTGCTGTCAGTGATGCTGCAGCCCTACATGCCCACAGTCAGCGCCACcatccaggagcagctgcaCGCGCCCCCCCACTGCAACACCCTGAGCGGGAAGTTCATCAGTCCATTGTTCCAGAAATTGGAAGCAGATCAGATTGAGGCTCTGAGGAACAGATTTGGGGGTCAGCAGAAAGCGACCAACGTGAAACCAGCTGATGAGGCTAAACCTGCAGCCCCTGCACTTGCCCCTGGTCTTATCCCTGAGACTGCTGGGAAAGCTGACCCCCAGAGAGCCAAGCAGCTCACAGAGGAGGTGGCACAACAGgGGGAGCGCGTGCGCACTCTCAAAGCCCAGAAAGCGGAGAAGTCCGTGATTGGAGCGGAGGTGGCCAAGCTGCTGGACCTGAAGAAGCAGCTGGTCCTGGCCGAGGGTAAGAACCCCGAGCCCCCCGTGACgaaaggaaagaagaaatgAGCTGAAGAACGGAAGGAGGGGAGGCAGCCATGGTGGATTCACTCCATTCCCCTGCCGGCTTTTGATCCTATTTGAACCTATTGACTGTTAATTCCAGACCCCAGAGATTGAAGAACAGCAATTTCACCGTATTCGCAAAACTGACTAGACAAGTTGCTATATTAGAACACTGTGTGCCATGTTAAGCAATATGCAATGTGCGATTGGCATCAGCTCAATAAGATTTGATCCAAAGcactatttatacatttttctatttgccACAATGTTTGACTTTTCTTTGTTGAGGGCTCTTTGGAAAGGAAGGGTTGGGACGCCTTAAAACCAGTCTCAGTTGCCTGATACATTTCTAAGCATTTTAACTCAGTCTAAAACTGGTTCTCTGAGCCAGTCTACAGTCACATTCTCGCTGCAcaaatctgacttttttttttttttcctcgttGGGAACAAACAGGAGTCTGTTTCATACAGGAACACAAACCTTTGGCAACTGAAAACGGAGAACGAAAGTTTCTGGATTTCATGGTGTTATGTTTAACAGGTGTTTGGCCTCAGGACCACTTCCACttttacaataaaaagaaaataaaaagtatggttttattttttactttctggTTTTAAGGGATAATACACTGGCTTTACTCACTTTACGCTGTCGATGAGGGCTCACAAGTTGTTAAGCAAGTAAGAACTagaacaaaagaaagcaaaatattcAGTTCCTCTTGCTCAGTGGTCTCAGTCTTTATTCACTTAATTTAGTGATCATTTTTTAGACAGCCACTGCACCAGTATTTATGAATCCATGTTCACAAGCCTTTAAATTAGACCAGTGATAATTCTCAGTTTACAATCGGGTcacagatttcaaaacaaaaagcttcTAATATTCTGGCCTTCATATTTAAATGTCCATTTTAACACAAGTAGTGGGAGTAGTCTTAAAGgttattaaattaagtatatttCATCCTTGAAATAAAGAATTACATCTCAACAGTATAATGATTGGtgactttaatttcaaaaacCAAAATGTTACAGAGATTACAATACATCTTTAATGTTTAGGTCAGATATAGCAGACAACATAACCTAAGAGTATAACATTCCTGTTTACATGTTTCAGTACTACTCATGCAGcatgcatttaaagaaataaattaaatgaataatgaagaCATAGAATTAAGTTTTGGATATGTTGACAACACATATTTCAAGAGCTCAGATCTACAGTATGGTTATAACTGATGATGGTACATTTTAGAGtaagaatacaaataactgTTAGTAGCAGCCTGCTATGGGGCATTGTCAGATTGTAGATTATTGGCAGATTAGCAGCCCCTCGCTGGGTAAAAAGGGTGCCAGCCAATCCACAATCTGACAATGCATGTTAACCTGGTTTCCATCTGCAGATACTCAAAGGTGAGCCAAGCCGGACACATCCTGGGGAAAACAGAGACGCGAGACTCCAGCTGCAGTTTGCGCCACTCAAGAGATTTTATTTGTTGGCATTTTAACCCATGTACTTCAAACACTCAGAATCTTTTTTCCCCTACTATGGGCAAACTACCTACTGCATAGTCAATTAATTATATGGGCAGTTTGCTCACAGTGGAAAACATGTCTCCTGACCTCTTGATAAAACAATCGCGGTCTGTATTCATCAGTGGATTCAGAGACCCTCATAAGCCTTGGACTCAGTGGTCTCATATACCACCAACATGCAGGTAAACCCAGCTCGTGTTGCCCATTTAATGAGTGTTTCTTTGAGCTTCTTTGCATTGACTTTCATTTCCACAGATCTAGGCACTTCCTGTGAGCTTAACTTCACTGCTGGTGGTCTAGCGAGTGTCTACTTAAGCTCACACTAAGATCCTGAATGACTCAAACTACATGAGGTGGAGTCTCATTCCCATGAatattatttgattgattttaatagTGCCCCAATCTCATTTgcgatatatattttatacatcacCTCACTTCAACATTCAAAATAGTGCAGCTCACCCACTTCCATCTTGTTTAGACATTTCCTTCCTTTTCCTGTTAACACAAGGAACTGAAGAGCGGGATCTTTTTAAAGACCCTCTACACATTTACATCCCAAAGACCGGAACCTAGGGTTTTTCTTTGCCCCCGTCCCTTCGGACATTCCCCTTGACGTTCTATCTTGACAGCCTGTCTGGTTACTTTCCTTCCTGTGCTCCCTCATGCCAACTCCTCTGCCTCCTGCACCACAGGGACCCTCTCATACAACTGTTGCCCAACTCTCTTGCACTGCCACATTCCGTACCTTTTACCTCCGATATGAAAGTGTGAACATTTGGACTCCCTAATAAGCCTGGTCAAGGACTCATTTCTCACTGGGCAGTTGTGTATCGCCCATCCGCTCCCCACCCCTTCCCTGCTGCCCCCTGACCCTGCTGTTGCCACTGCTGCTACCGCTCTCACTCGGACCCTCTTTTCGTGAcactttttgcatttatttcatgGTCTCCAGCCTCGTGATGGAGACGGCCGCTATGGGAATGCTGTGCTCTAGGACTTCTTGGTATTGACCAGCTTCTCGATGAGCGCCCTCCTGGTGTGCTGGACCTCCTCACTCAGCCGCTCGATCTCAGCCTTCAGGCGCTCATTCTGCTCCGTCAGCTCCACCACCCGCCTCTCGTTCTCCAGCTCGCGTTCCTTCCTGCTCTTCTTGGGTGCCCCTGCTCCagatggagaggaggaggaggaggagggagagaaagaggaggaggaagagggtgTGCTTCTCTTGCGCTTGTGAGCCACCCTGCCCTGGGAGCCCACGCTGGACGGGGGCGACTCAGGGGCCGAGGGCAGCTCCTCTTCACTGGACAGCAGTGAGGGGTCGAGCCCGTTcctctccccttccccttccccttccccctcgccctcctcctcctcctcctcctcctcctcttcaggCAGCTCCTGGAGACAGCCTACGATCTCGATCACCC

Function

GO: NA

KEGG:

id description
K01874 MARS, metG; methionyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008776 True 5354 mRNA 0.51 19 11335776 11348560

Neighbor

gene id symbol gene type direction distance location
AMCG00008773 NA coding downstream 85539 11233492 ~ 11250237 (-)
AMCG00008772 NA coding downstream 114518 11210186 ~ 11221258 (-)
AMCG00008766 NA coding downstream 163848 11150919 ~ 11171928 (-)
AMCG00008767 NA coding downstream 192415 11134186 ~ 11143361 (-)
AMCG00008762 NA coding downstream 262185 11062287 ~ 11073591 (-)
AMCG00008780 LOC107566399 coding upstream 59109 11407669 ~ 11417859 (-)
AMCG00008779 NA coding upstream 112644 11461204 ~ 11474304 (-)
AMCG00008781 NA coding upstream 199451 11548011 ~ 11551118 (-)
AMCG00008785 shmt2,LOC102307393,LOC101478662,LOC103359782 coding upstream 366102 11714662 ~ 11728170 (-)
AMCG00008786 NA coding upstream 398512 11747072 ~ 11754413 (-)
G51403 NA non-coding downstream 77558 11226487 ~ 11258218 (-)
G51354 LOC100846954 non-coding downstream 171402 11163346 ~ 11164374 (-)
G51344 NA non-coding downstream 195503 11057677 ~ 11140273 (-)
G51261 eif4b non-coding downstream 496104 10839106 ~ 10839672 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding downstream 532067 10801108 ~ 10803709 (-)
G51574 NA non-coding upstream 654365 12002925 ~ 12010394 (-)
G51588 NA non-coding upstream 732652 12081212 ~ 12093785 (-)
G51634 NA non-coding upstream 994580 12343140 ~ 12343342 (-)
G51674 NA non-coding upstream 1090191 12438751 ~ 12439523 (-)
G51693 NA non-coding upstream 1106359 12454919 ~ 12476199 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 9417 11235642 ~ 11326359 (-)
G51250 NA other downstream 536622 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 617575 10670949 ~ 10718201 (-)
G51241 NA other downstream 623291 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 732403 10560866 ~ 10603373 (-)
AMCG00008815 NA other upstream 1252731 12601291 ~ 12605260 (-)
G51797 NA other upstream 1542251 12890811 ~ 12891597 (-)
G51799 NA other upstream 1546775 12895335 ~ 12897134 (-)
G51867 NA other upstream 1652266 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 1741977 13090537 ~ 13097934 (-)

Expression


Co-expression Network