AMCG00008778


Basic Information

Item Value
gene id AMCG00008778
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11369713 ~ 11392029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008778
ATGCTGTCAGGCAGCTGGCGCAAGAATGCAGCACCCTCGCCGGCCAAGGGGGGCAGCGTTGTGCTGGAGGCGCAGTATGACTACTCGTACCGGGGGGCGGACGGGCGACAGGTGTCGATGTGCGAGGGCGAGCGCTTCGTTCTCTTGCGCAAAGCCAATGCCGACTGGTGGCAGGTGCGCCGCCTGAGCGCCCCCCCCAAGGCCAAGCCCATCTACGTGCCGGCCACCTACGTCACCGAAGTAAAGCCCAGCATTCGTCTGGTCCCCCGCACCTCCCTCACACCCTGCACACAGACGCAGTGTACAGTGAGCTCCAAAGTCTTCTGCCGCTCCATGGAAGACCTGAACTCCAACAGTTCCTTTCGAGGAGGGGTCGGGTCTGGGGCCCGCTTCCCCACACTGCCCCTCGCCGGACCCCCTTCCTCTGGACATTTCCTGGCTCCCCCCGGCCCCTCAGCTGCCGTACCCATGGCCCGAAGCAAGAGCTCCAGCATGCTGCCCCAGAACCCCTACCAGGAGTCGGGCGAGGAGGACGGGGGCAGCCCAGCCAGACACCCCCAAATCAAGTCTTACAGCCAGGGGGACATCGTGGAGGCCCCTCGCAGACACAGCCACATGCAGGTACACAACCTGGAGGAGGTGAAGCGGCGCCAGGCGGAGCCTCCCAGCCCAACCCAGCGGcccctgcagctgctggacCTGTGGGAGCAGCACCTAGACCCCACCTCGGGCCGCTGCTTCTACGTCAACAGCGTGACACGGGAGCGCTCCTGGAAACCCCCCCGTCGCGCCCGGGAGCGCACGCCCAGCCGGGCTAGTCCACTTCAAGGAGGAACATTCCCACGAGACTCAAACCACCTTTCGCCTCCAAATCAGGATTCTGGCAATGGCAGCATTtataagCACTCCCCGGATGCCAGCCCAGTCACTTTCATCTACAATGTGCAGGACGGGGACGGCGGCTGGGAGCTGCGACAGAACATCCAGAGGGCCGCTTCCTCCGACGCCCTGAACAGCGCTCCCTTCAGTCCCAGCGAGGCGCAGCTGCGCAACAGTAGTGTCCTGCTCAAGAGCGAGAGGCACAACCAGGCTCGCTCCATGATCTTCCCTGAGCTCAGCGACTCCAAGGTTGTCCAGCACCGGAGGAATCTGTCTCACCACATCCTGGGTGGGGGTGTGGAGCCCCCTTCCCCTGTTAGCTCCCCAGACAGCTCTGACAGCACCACACCGGAATTGGAAAAGGCCGGGTTGCTCAATAAAACTAAGATTGCCGAAGGGGGCAGAAAGCTAAGGAAGAACTGGAATCCCTCGTGGGTGGTGCTGGTGGGGAACAGCCTGGTCTTCTTCAAGGACCCCAAAGCACAGACACCCTCCAGCTGGCTCCGCACGGTCACCGGGAATGAGTTCCTGCTGCACGGAGACGAGGACGAGTCCCGATCTGGACGCAAATCCTCCTTACCCCGCTCCACTTCCAACCTGGAGAACTCGGAGAAGAAGCGCGTGAAGAGCCGCCTCAAGAAGCTGATCCTGAAGAGACCCCCGCTGCAGGCCCTGCAGGAGAAGGGGCTGATCAAGGACCAGGTGTTCGGGTGTCGACTGGATGCGCTGTGCGAGCGGGAGAAGAACACGGTGCCCAAGTTTGTGCGGATGTGTACCGAGGCCGTGGAGAAGAGAGGGCTGGAGGCGGATGGGATATACAGGGTGAGCGGCAACCTGGCGGTCATCCAGAAACTGCGCTTCATCGTGGACCACGAGCGAGCTGTGACCACAGATGGCCGGTATTTGTTCCCTGAGGAGCGGGTACAAGAGGAGAAGCTGAACCTGGATGACAGTCAGTGGGAGGACATCCACGTTATCACCGGAGCACTCAAGATGTTCTTCCGGGAGCTTCCGGAGCCGCTTGTCCCCTATGGGTTCTTTAACGACTTTGTGGAGACCGTCAAAATCCCCGATTACCTGGACAGGCTGACCCGGATGAAGTGGCTGGTGCAGAAGCTGCCGCCCCCCAACCACGACACCATGAGGTTCATCTTCACACACCTGAAGAGggtgAACGAGCACTCGGACACCAACCGCATGACCACCCAGAACATCGGCATCGTGTTCGGACCCACGCTGATGCGGCCGGAGAGAGACTTCACCAACATGGCTGTCAACATGGTCTACCAGAACCAGGCCGTGGAGCTCATTCTTAGCGAGTACGAGCACATCTTTGGCCCAGAGAGAGACTTTCTCTGA

Function

GO: NA

KEGG:

id description
K19844 BEM2; GTPase-activating protein BEM2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008778 True 2238 mRNA 0.61 18 11369713 11392029

Neighbor

gene id symbol gene type direction distance location
AMCG00008775 NA coding upstream 33492 11331875 ~ 11336221 (+)
AMCG00008774 LOC106566145,LOC107558166 coding upstream 78413 11279912 ~ 11291300 (+)
AMCG00008771 NA coding upstream 171961 11189422 ~ 11197752 (+)
AMCG00008770 NA coding upstream 180557 11183217 ~ 11189156 (+)
AMCG00008769 NA coding upstream 217150 11144022 ~ 11152563 (+)
AMCG00008783 r3hdm2 coding downstream 175829 11567858 ~ 11599637 (+)
AMCG00008782 LOC107563942 coding downstream 210386 11602415 ~ 11618855 (+)
AMCG00008787 NA coding downstream 441257 11833286 ~ 11834344 (+)
AMCG00008791 NA coding downstream 590749 11982778 ~ 12002806 (+)
AMCG00008798 tuba4l,LOC105008555,LOC107706828,LOC107669576 coding downstream 721355 12113384 ~ 12126602 (+)
G51298 NA non-coding upstream 312277 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 416293 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 459068 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 565606 10803906 ~ 10804107 (+)
G51226 NA non-coding upstream 657228 10675565 ~ 10712485 (+)
G51446 NA non-coding downstream 73783 11465812 ~ 11466083 (+)
G51483 NA non-coding downstream 320683 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 670045 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 683459 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 686668 12078697 ~ 12080204 (+)
G51297 NA other upstream 329039 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 523277 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 598038 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1431961 9915494 ~ 9937752 (+)
G51445 NA other downstream 68334 11460363 ~ 11465488 (+)
AMCG00008784 NA other downstream 302625 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 1147569 12539598 ~ 12549618 (+)
G51734 NA other downstream 1323465 12715494 ~ 12716786 (+)
G51756 NA other downstream 1450686 12842715 ~ 12846233 (+)

Expression


Co-expression Network