AMCG00008780 (LOC107566399)


Basic Information

Item Value
gene id AMCG00008780
gene name LOC107566399
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11407669 ~ 11417859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008780
ATGTCACCTCAACGCAACTTGCGGGCTTCCTATTGGGCTGAGAAGAAAGATTTCGACTTCGAGAAGCTGACAGCCCTGGGATCCGAGGGGGAAGATGAGGAATTCCACTCCAGCATGGAGGGCCAGGACAGTCACGAGAAGAACAGCATCACGGCCAGCGACGGCACAGAGACCGCCAGCCCCACTCGCTGTGCGCGAGGCCGTAGCTTGAGCCCCGAGCCCTGGGTGGGGGGAGCCTCGGGGGAGGCGGGCACCACCCCGCACTTCATTTACGGTCGGAGTGAGCTGCCAATTGCAGAGGACGCGATGGAGCAATATGACTTCCTGAAGAGACTGAGGGAGACATCCCACCCATCCAGCCCTCCAGAGCATCTGACACAGAACGGCACAGCGGTGATTTACCCAGCAGCCCCTGAGGAGGACCTGCCCCCTCACTGCTGGTCTCCTGGGGAACACGGATCACCAGAGGGTCATGAAACCACCCCTGGGAGTCCCGACGGTACCAGGATGCTCCTGGTGTGCCCATTCTGCCAGCGCACGTACCGCCGAGACGCCTCCCTCCGCGAGCACATCAAGTTCTGCCACGAGAGAGACGGCAGCAGACTGGTGTGCCCACTGTGTGGCTACAACACCACCTACAGAGCCCAGATGGAGAGGCACATGGCCATGCACAACCAGGCCCAAAGCAAGAATTCAACGTTTGATCAAGCAGAGAACAGGAAGTTTAAATGTCAGCAATGTGGAAAGgcattcaaatacaaacacCACCTGAAAGAGCATGTTCGCATTCACAGTGGTGAGAAACCATACGAGTGTGCCAACTGCAAGAAACGATTCTCACACTCTGGGTCCTACAGCTCGCATCTCAGCAGCAAGAAGTGCCTGAGCGGGGGCAGCATCAACTCTTCTCCGACATCGTCCACCCTTCACAGCCCTCCTCTAGTGGGGCCAAAAGACACCGTGAAGGGCTTGGGCTCACCATACCCCTTCCGGACTCAAGAGAGGTACCTGGATAAGCAGCACGTGGAGGACTTGATTTCACCGGAGAACTTGGCTTTCCTTAGGAACAGGGACCTGAGTCTGGACATGGCCGAATTCCCGCAGCACTCAATTTTTAAAGGTGCGACGCTGCTGCCATACTTGCACCCTAGCAGTAAATTCGAGCACATGCTGCAGGAGATGCTCCGCAGGGGCACCTATGCAGAATCAGGGGAAAGTGTTCCTACAGGGGGAGGAGACAGAGGAGTAAGGTCCAGTAGAGACCTGTCCCTCGATGGGAAAGACTTGCCAAACCGGCACAAGCCCCATATAGAAAGAGGCAGGGTGTCGCACCAGTCCTCGGAGATAGAGGAGCCCGTTCTGAGTGGGGTGACCTGCAGGTGGTGCACTCAGCTGTTCCCCAGTGCAGCTGTCCTGCTGCAGCATGAGAAGTACCTGTGCAAGATGAACAGGGAGGCCATGGAGGTCCCAGAAGGTCCTAGGGGCAAAGAGGACTCCCCTCTGAACTTCTCCAGGCACTCTCTGCGACATGACGGCCAGAAGTCAGCCTTGGCGTCAGGTCCCACCACATCTGCTCTCCCTGTCCCCAATGGCTATTCTGAAGACAGGACAGCACTGCCAAGACCAAGGGCTATCCATCACCAGCTCTCAGTCGCCATGCTGTCACCAACCCTCACCTCTCGCACATTCTGGCCACAGCCTCTCAAAGACGGGGGCAGCCCTGTGCCCCCTGGCAGCCCTGCCACACTGGAGGTTACATCTCCACCCTACCTGGACAGAAGACGTTTGCCTTCAGGGTTTGCATCTGCTCTGTGTCTCGATCTGTCTACAAACTCCTCTCCTACTAACAAGGCAGGTTTCTCCTGCAGAACCCCTCTCACCAGTGGCTCCCAGTCCGAACCCTTGGACTTATCCCTGCCCAAGCCCAAGGAGGAGCAAAGGACTGAGCCCAGTGAGGAGAGGAGCAGGAACGGAAGATCTCCACTGgtagagaagagagagagagtaagccCAGTCAGGGGAACGCCCCCCCTGCAGCGTGAGCCAGCCTACAGCAGGGCCTCTATATTTGGCCGCTCGGTTTATAGTGCCTTCCCCTTGTTCAACACCATCCTGCCCGCCGGCCTGGGGAATCCAGGGCACGACAACCTCCCGGGAATCCCACTGAACACAGCGGCGGCAGAAAACCCTTTCCTTACACCAATGGCCTACATGTTTGAGCCTGACCCTGAGTCTGTCCTGAAGAGAATCCAGCAGCAGAGACAAGTCATTATGGGGGAGACTGGTAACCAGGGCTGTCTGGACTACTTGTCTTTGATGGACGACGGACTCGAGGGGGACTGCGGTCCGGGTAGAAAGCGCCTGAAGAAGACGGAAGAGGGGCTCTACGCCTGCGATATCTGTGATAAAACGTTTCAGAAGAGCAGCTCACTGCTTCGGCACAAGTACGAGCACACAGGCAAGCGGCCGCACCAGTGCAAGATCTGCAAGAAGGCGTTCAAGCACAAGCACCACCTGATCGAGCACTCCCGCCTGCACTCTGGAGAGAAGCCCTACCAGTGCGACAAGTGTGGCAAGCGTTTCTCCCACTCGGGCTCCTACTCGCAGCACATGAACCACCGCTATGCCTACTGTCGCAGGGACCTGGACCCCGATGCCGCAGGGGAGGAGCTACAGCCGGAGACCACGCCCCTCCGTGAAGCTTCCACCTATCCTGAGGACAGCCTGGATTTGGGCCCAGTCCCCAGGAGGGCGGAGCTGAGCCTACAGGCCGCGCCATCATACTTCTCAGGTACCGACTTTGACTTGGGTCCTAGCTCCCAAGGGGAAGAACCGGGCCCAGAGAGCACGCCTTCCTATTTAGCTGGACAGAGAGTGGCGCTTTCATCCGCCTCCCACAGAGTCGGCTTCCCACAGCGGTTGACACCGACGGACGAGTCGTCTTTGACCGAGGACGGGGAGCAGGCCAGCGAGGACAGCGACGGGCAGCAGGCTCCGGGCGATGGCGGGCACCGGGCAGAGCATGAAGAGAAGGGGACTGACGAAGAGGGCAGTGACAGCGGTGTGCCGGAGAATATCAGCTGCCCGGATGCCGCCGTCACAGAGGAACTGGGGCAAGAGACGCCCGAGACAAAGGAAGAGCATAAGGTCTAG

Function

NR:

description
PREDICTED: zinc finger E-box-binding homeobox 1-like

GO: NA

KEGG:

id description
K23560 ZEB2; zinc finger homeobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008780 True 3153 mRNA 0.58 8 11407669 11417859

Neighbor

gene id symbol gene type direction distance location
AMCG00008776 NA coding downstream 59109 11335776 ~ 11348560 (-)
AMCG00008773 NA coding downstream 157432 11233492 ~ 11250237 (-)
AMCG00008772 NA coding downstream 186411 11210186 ~ 11221258 (-)
AMCG00008766 NA coding downstream 235741 11150919 ~ 11171928 (-)
AMCG00008767 NA coding downstream 264308 11134186 ~ 11143361 (-)
AMCG00008779 NA coding upstream 43345 11461204 ~ 11474304 (-)
AMCG00008781 NA coding upstream 130152 11548011 ~ 11551118 (-)
AMCG00008785 shmt2,LOC102307393,LOC101478662,LOC103359782 coding upstream 296803 11714662 ~ 11728170 (-)
AMCG00008786 NA coding upstream 329213 11747072 ~ 11754413 (-)
AMCG00008788 LOC106565466 coding upstream 382302 11800161 ~ 11878186 (-)
G51403 NA non-coding downstream 149451 11226487 ~ 11258218 (-)
G51354 LOC100846954 non-coding downstream 243295 11163346 ~ 11164374 (-)
G51344 NA non-coding downstream 267396 11057677 ~ 11140273 (-)
G51261 eif4b non-coding downstream 567997 10839106 ~ 10839672 (-)
G51251 krt18,LOC107727028,LOC107551541,LOC100692632,LOC102212553 non-coding downstream 603960 10801108 ~ 10803709 (-)
G51574 NA non-coding upstream 585066 12002925 ~ 12010394 (-)
G51588 NA non-coding upstream 663353 12081212 ~ 12093785 (-)
G51634 NA non-coding upstream 925281 12343140 ~ 12343342 (-)
G51674 NA non-coding upstream 1020892 12438751 ~ 12439523 (-)
G51693 NA non-coding upstream 1037060 12454919 ~ 12476199 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 81310 11235642 ~ 11326359 (-)
G51250 NA other downstream 608515 10797632 ~ 10799154 (-)
AMCG00008748 LOC107666380,LOC108429286,LOC107705699,LOC107681386,LOC107559866 other downstream 689468 10670949 ~ 10718201 (-)
G51241 NA other downstream 695184 10675756 ~ 10712485 (-)
AMCG00008744 NA other downstream 804296 10560866 ~ 10603373 (-)
AMCG00008815 NA other upstream 1183432 12601291 ~ 12605260 (-)
G51797 NA other upstream 1472952 12890811 ~ 12891597 (-)
G51799 NA other upstream 1477476 12895335 ~ 12897134 (-)
G51867 NA other upstream 1582967 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 1672678 13090537 ~ 13097934 (-)

Expression


Co-expression Network