AMCG00008783 (r3hdm2)


Basic Information

Item Value
gene id AMCG00008783
gene name r3hdm2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11567858 ~ 11599637 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008783
ATGAAAGAGGCGTCCTCGTTCACAGAAAGCAAGCCTCGCAGAcaacagagaagaggagaggaaaaggagggggagagagcgagTGAGAAGGAGGCTTGTGTTTCTACCCAGATTGGCAGTGTTTTGCACGGAGAGATGGCATCTGCTCAGGTCTTCCTTGAGATCAGTGTCGTCCGTGTGTTCGCCGAGTGCACAGTGGCCTCCTGTGAAGCCGCCCGCTATGCCCCAGCAGTGACTCTATCCCTGGTGCAGCAGCAGTGCTTAGTTTCGTGACATGGAATGCGATTTATCCACCGCCCAGCCGAGGAATCTGCTGTAGCTGCTCCCCCCGACTCTGCGACAAGAGCGGGATTCCCCACGACCGGGTTGAGTAACAATACAGTCGCTTTGGCTCCGTGTCCCAGGACGCTCTCCTCCGCCCCCCCAGTGCTTTTAAGATGTCCAACGGCGGCCCCCATGAGAGCATGGACATCATGAAGGAGAGCGAGAAGAAGCTGGTGGACGAGCCCGTGAACAAGAACAAGCTGACCATGCGGGCAGCTGGCAAGGAAGGCACCGACAAGGAGGGAGAGGAGTCGGGCACTACGCAGGACATGCAGGTGGGGGGCTTACAGAGTCCAGGAGGGTGGGAGGGTCGAACGCCAAGCTGAAGCTGGTGAGGAGCCTGGCGGTGTGCGAGGAGTCCTCTGGACCCTTCTCTGCAGACAGCCCCCCAGAGTTGCAGGATATTATTCAGCTGCACATCAGTTGCCCGTCGGACAAAGAGGAGGAGAAATCCTCGAAGGATGAGTCcgagaaggaggagaaagagaagaacaAGGACAAGGCGCCTCGCAAGATGCTCTCTCGTGACTCCAGCCAGGAATACACAGACTCCACTGGCATCGATGTGCATGAGTTCTTGGTcaacacactgaaaaataaCCCCAGGGATAGAATGATGCTGCTAAAACTGGAACAAGATATCCTGGAGTTCATCAACGATAACAATAATCAGTACAAGAAGTTTCCTCAGATGACCTCCTACCACCGGATGCTGCTGCACAGGGTGGCTGCGTATTTCGGCATGGATCACAACGTGGACCAAACCGGAAAGGCCGTCATCATCAACAAGACCGGGAACACACGCATccCTGAACAGAGGTTCTCAGAGCACATCAAAGATGAGAGGAACATGGATTTCCAGAAAAAGTTCATCCTGAAGAGAGACGATGCCAGCATCGATAAAGATGACAACCAGATCCGTGTGCCACTTCAGGATGGGCGCAGGAGTAAGTCCATCGAGGAGCGGGAAGAGGAGTACCAGAGGGTCCGGGACCGGATATTCGCTCGGGAATCCTCCCAGAATGGATACATCAATGACAACAGGGGGAACAGGGACAGCTCCAGCCGGGCCTCCAGCAGCAGacagagcagcacagacagTGAGCTCAAGTGCCTGGAGCCCAGGCCCTGGAGCAGCACCGACTCGGACAGCTCCAACCGCACCCTGCGCCCCCCTGTCACCAAGGCCAGCAGCTTCTCGGGCATCTCCATTCTCACCCGCGGCGACAGCATCGGCAGTGCCAAAGGGGCACCCACCGGATGCCGGGTGTCCCGTACAGGTCAGGCGACGTGGATCGACCGACCCGCTGACGTTTTGTGCGTGCGTTTAACAGgacTCCCGATCGCCACTCCCGATGTGGTCAGCCAGCCCCCACAGCCTGGGCGTAGCCTGCTCCCCTGCCCCTCCAATCAAGCACAGCCCCAGGGGCAGCAGGCACAGCCCCCCCAGAGTGCCCTcctgcccacccccccacagcCACCCATGGGCAACCACATGATGGGGCAGCCTGTGGCCTCCCTGCAGCCCTCTCCACAGCCAGTGCCATACTCCAGTACCTCCTGCCCGCAGGTCATCCTGCCAGTGTCTCCCCCCCAGCAGTACAACATGACAGATGACTTGCCCCCACAGTTCAGCCAGATGACCCTGAGTCGACAAGGCTCCAGTGAAGCCCCCGAGCCCCCCTCGCTATACCAGCCGCCCCCCGTCCTGCCCCAGCACCCCCCACCACAGCCTGGCTACATCATGACCTCGGTGGCCCAGCCCATGGCCACGTCGGCCTACCAGCCCGGCTCCGGCCACCCCCACCCGCCGCCTCCGCCGCCTCCCTCGCAGACGGTCATGCAGCCGCCGCCCCCCCAGGGGTACATGCAGGCCCCCCAGCCCCAGCAGaTCCAGGTGTCGTACTACTCCCCTGGGCAGTATCCCAGTTCGGGACAGCAGTACCGCCCCATGTCCCATCAGGTGTCTTACCCACCACAGCGCTCCCAGCCCCTCACCCAGCCAGGCCAGCAGTCCGGTCTTCAGACCATGCTTCCCAATCAGCAGCAAGCCTACCAAGGCATGATAGGAGTGCAGCAGCCACAGAACCCCAGCCTAATCAACACACAGCGGGGCAACATGGGAAATCAGATGCAAGGCATGATGGTCCAATATCCGCCGCTGCCTTCCTACCAGGTGCCCGTGGGGAATGAATCTCAGCAGGTGGTGCAACAAACGTACCAGCAACCCGTGATGGTGCCCGCCAACCAGTCAGTGCAGGGGGGGCTGCCAGGGGGCGCCATGCCAGTCTACTACAGCGTCCTCCCCCCAGCACAACAGAACAGCACAAGCCCATCGGTGGGTTTCCTGCAGCCCTCCAGCTCTGAACAGTACCAGATGCCTCAGTCCCCATCTCCCTGTAACCCATCACAGATGCAGCAGCAATATTCAGGTGTGGCCCCGCCAGGACCCGGTGTGGTGGTGATGCAGCTGAGTGTCCCCAATGGGCCCCAGCCCACCCAGAACCCCTCCATGGTCCAGTGGAACCACTGCAAGTATTACAGCATGGAGCAGAGGGGGCAGAAACCTGGAGAGATGTACAAGGCAGACAACGGCCCCCAGGCCAATAATCAGATGAACAGTCCCCTGGCGTCCCCCACCCAGTCTCCCACCCCATCTCCTGCGGGCAGCGTGAACAGTGTGTGTCCCGGCCTGGGGCCCCTCCCTCTCATCACACAGTTCTCCCGCCCAGTGGGGCCCGCACAAGGTGACGGTCGCTATTCTTTGCTGGGACAGCCTCTCCAGTACAGCCTGTGTCCCCCCCAGCTCATCCACAGCCAGTCCTCATACTCCACACATCAGgGACAAACTGGAATGAAACATGGCACACGTGGGAAAAGACAGACCCTCAAGTCGGCATCCACAGACCTGGGCACCAATGATGTGGTTGTCAGTCGTATTCTGGAGGTGACGGACCTTCCGGAGGGCATCACACGCACAGAGGCGGAGAAACTATTCAATCAGTTGGCCATGTCGGGAGCCAAGATCCAGTGGCTGAAGGACACGCAGGGCCGAGGGGACTGCGTAGGAGGGGGGGGCGCTGGCGGCAAGGGCGACAACGACCCCGCACACCTCTACACTGTAGTGGCCGTGTTCCCCAACACGATGGCCGCGCAGAGTGCTTCCTTCAAACTCAATAACTCCACCAGCCGCTTCAAACTGCGTGCCACCACAAAGAACTATGACCTCCGCATCCTGGAACGAGCCAGTTCGCAGTAAGGAGGGGTGGGGGCGTCGAgaacagggaaagaaaaagagggaagaaaaagaagagaaattAAGGGAGAAGTTCCAGAGTGGGGTACTCCaactttaattgattttttttattttttaagtttttttttatttttttatttgccttttttttgtcagaagagcacactgatacatgcacatttgtgtgtctttggcgtgtgtgcatgtgtgcgtacCATTACACACGCATGCACATATCACCGGACACGCGGTGCACACGGTAACACTGGACAGTCGACCTCATTCAACCCCcccatcccacacacacacacacacacacacacactccccctcTTTATTTCCTCTCTACCCGATGCTGctttgctccctctctcttcctccaccTCTTAAGTGAACCTGCTCCCTCCGTCTTTTGTTACGATCTCAGACTCTCTCACTTTGGTTCCATGGCTGTCTGTTGGCTTTCGTTTGCCTTTTACTACTGTGGCTTCCTGTTCTGCGCtatttcttgtttagttttgtttttgttctgtttttttttttgtttttttttcggttcgatatatttatataagtgATTTAAGGATTTacgaaaatatatatattcagtgatTTCAGTGGAAGACTCTATTCCCCCTCACCTCCTTCATTTCCCCACCCTCTGTCCCTTTTCCCTCGCCTCTCCTCCTCAgtccctcctctcccctcctcctcccttctcaCCTCTCCTCCTCTGGCCTCCcgcctccctcctctctcctctatcCTCTATCATGTGTTTGCGTTTTTTGTTGACAGCTGTGCAGAGCGTACAagaagaattatttaaaaagtgcacAATGACTGCATACGTCTACTGtaaattttatttaatctgttatttttgtttttaaaaatataaaagaaaa

Function

symbol description
r3hdm2 Predicted to enable nucleic acid binding activity.

NR:

description
PREDICTED: R3H domain-containing protein 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008783 True 4491 mRNA 0.56 24 11567858 11599637

Neighbor

gene id symbol gene type direction distance location
AMCG00008778 NA coding upstream 175829 11369713 ~ 11392029 (+)
AMCG00008775 NA coding upstream 231637 11331875 ~ 11336221 (+)
AMCG00008774 LOC106566145,LOC107558166 coding upstream 276558 11279912 ~ 11291300 (+)
AMCG00008771 NA coding upstream 370106 11189422 ~ 11197752 (+)
AMCG00008770 NA coding upstream 378702 11183217 ~ 11189156 (+)
AMCG00008782 LOC107563942 coding downstream 2778 11602415 ~ 11618855 (+)
AMCG00008787 NA coding downstream 233649 11833286 ~ 11834344 (+)
AMCG00008791 NA coding downstream 383141 11982778 ~ 12002806 (+)
AMCG00008798 tuba4l,LOC105008555,LOC107706828,LOC107669576 coding downstream 513747 12113384 ~ 12126602 (+)
AMCG00008795 NA coding downstream 532849 12132486 ~ 12143358 (+)
G51446 NA non-coding upstream 101775 11465812 ~ 11466083 (+)
G51298 NA non-coding upstream 510422 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 614438 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 657213 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 763751 10803906 ~ 10804107 (+)
G51483 NA non-coding downstream 113075 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 462437 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 475851 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 479060 12078697 ~ 12080204 (+)
G51614 NA non-coding downstream 591096 12190733 ~ 12249909 (+)
G51445 NA other upstream 102370 11460363 ~ 11465488 (+)
G51297 NA other upstream 527184 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 721422 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 796183 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1630106 9915494 ~ 9937752 (+)
AMCG00008784 NA other downstream 95017 11694654 ~ 11704413 (+)
AMCG00008810 NA other downstream 939961 12539598 ~ 12549618 (+)
G51734 NA other downstream 1115857 12715494 ~ 12716786 (+)
G51756 NA other downstream 1243078 12842715 ~ 12846233 (+)
G51812 NA other downstream 1325601 12925238 ~ 12926794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location