AMCG00008784


Basic Information

Item Value
gene id AMCG00008784
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11694654 ~ 11704413 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008784
TTGAACTGaaacatatttgtttcattttggatTTGACGAGACCGGaacaaacaaacccaacatTATGATTCGTGTACTAGTTCGACAAGCTAAGAAGAAACCTGGACTCATCcccctcttcttcttcatcaGCCTGGGGATGGGCGGGGCCTCCCTCTATCTGCTCCGCCTAGCCTTCTTCAACCCCCACGTCTGCTGGGACAAGAAGAACAATCCCGAGCCCTGGAACAAGCTGAGCCCAACCTATCAGTACAAGTTTGTGGCCGTCAACACTGACTACAAAAATCTGAAGAAGGATGGGCCGGAATTCTAAAGGTTTCCACGGCAACTCGCAAGTGCACCTCACTTCAGGGGCCTCCCGGTCGTCATGGTGTCAGAGTGGCTCAGCCTCACTCTGGAGAAGAgtctctctcctttttctctctctctcttgtgctTTAATTGCATGCAAAGTGCCTAACCTCGTTCAGCGCCTGGATTACATTAATACTGCGGATCATGATAATACTAACACGTGGGGGGTTGAAAGTTTTGATCTAGAACGTAGAATAGAACTCTGTTCCTCTTGCACGGAACCATAGAACACCCGTTTATATATTCCCTCTGGTCCAGTGCTAGTAGCTATTTCAACTGCTGTTATTGGGCTCACAGTGTTACTAGTCTATTAGCACTTAACCAAAGGAAATGTATGTAGCAGTGCTCTATAGCAGTGGATCtcaactctggtcctggaggagcctcTACCCAGCTGTTTTTGGTTCCAACCGAGCCCCcaattacttcattgaacccttaatttaagtaataatgtcctaaatcagaaccttttaaatattttaaacagtaggggttaagtataaaattgtatcgGAACATAtaatcttattaaggaaccagctttttatcagttacacaatttaaagagtgaaaagtaatcaaattattacttcaattaaggattcaattaaataattgagagctgggttggaacaaaaaccatcagggtagggggtcctccaggacaaCTGCTCTATAGCATCTGGAAGTCATTGGGAGCATGGCGTTAGCTTTTATGCATTCAATCTGATCTAGCtgcaaaagacaaagcaaaaataGGGAAAATCTTTACGGATTTATGGACTCTGCGCAAGTGGTGCTGGAATGGGGGTCCTATGTCAGACCTTTGTAAAAGTGTAACTCctgaataaaatgtgtgtgaacTTGAA
>TU64432
aaATAAACGAATTATGCGACTGCGCCCCCTCAGGCTTCATCCCAGTGTCTATGCAACAGGTTTCAGAGAGCGCACTCTCCTAGCATGAAACCTGTATCATTTGGTGGAGGAAACCGTTAAACATATATCGATACATTTGtataacaaactttttttttttttttaaatcatactaTCAAAGCTGAATTTGAACTGaaacatatttgtttcattttggatTTGACGAGACCGGaacaaacaaacccaacatTATGATTCGTGTACTAGTTCGACAAGCTAAGAAGAAACCTGGACTCATCcccctcttcttcttcatcaGCCTGGGGATGGGCGGGGCCTCCCTCTATCTGCTCCGCCTAGCCTTCTTCAACCCCCACGTCTGCTGGGACAAGAAGAACAATCCCGAGCCCTGGAACAAGCTGAGCCCAACCTATCAGTACAAGTTTGTGGCCGTCAACACTGACTACAAAAATCTGAAGAAGGATGGGCCGGAATTCTAAAGGTTTCCACGGCAACTCGCAAGTGCACCTCACTTCAGGGGCCTCCCGGTCGTCATGGTGTCAGAGTGGCTCAGCCTCACTCTGGAGAAGAgtctctctcctttttctctctctctcttgtgctTTAATTGCATGCAAAGTGCCTAACCTCGTTCAGCGCCTGGATTACATTAATACTGCGGATCATGATAATACTAACACGTGGGGGGTTGAAAGTTTTGATCTAGAACGTAGAATAGAACTCTGTTCCTCTTGCACGGAACCATAGAACACCCGTTTATATATTCCCTCTGGTCCAGTGCTAGTAGCTATTTCAACTGCTGTTATTGGGCTCACAGTGTTACTAGTCTATTAGCACTTAACCAAAGGAAATGTATGTAGCAGTGCTCTATAGCAGTGGATCtcaactctggtcctggaggagcctcTACCCAGCTGTTTTTGGTTCCAACCGAGCCCCcaattacttcattgaacccttaatttaagtaataatgtcctaaatcagaaccttttaaatattttaaacagtaggggttaagtataaaattgtatcgGAACATAtaatcttattaaggaaccagctttttatcagttacacaatttaaagagtgaaaagtaatcaaattattacttcaattaaggattcaattaaataattgagagctgggttggaacaaaaaccatcagggtagggggtcctccaggacaaCTGCTCTATAGCATCTGGAAGTCATTGGGAGCATGGCGTTAGCTTTTATGCATTCAATCTGATCTAGCtgcaaaagacaaagcaaaaataGGGAAAATCTTTACGGATTTATGGACTCTGCGCAAGTGGTGCTGGAATGGGGGTCCTATGTCAGACCTTTGTAAAAGTGTAACTCctgaataaaatgtgtgtgaacTTGAACCCGC

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008784 False 1226 mRNA 0.43 4 11694841 11704408
TU64432 True 1418 lncRNA 0.43 4 11694654 11704413

Neighbor

gene id symbol gene type direction distance location
AMCG00008782 LOC107563942 coding upstream 75799 11602415 ~ 11618855 (+)
AMCG00008783 r3hdm2 coding upstream 95017 11567858 ~ 11599637 (+)
AMCG00008778 NA coding upstream 302625 11369713 ~ 11392029 (+)
AMCG00008775 NA coding upstream 358433 11331875 ~ 11336221 (+)
AMCG00008774 LOC106566145,LOC107558166 coding upstream 403354 11279912 ~ 11291300 (+)
AMCG00008787 NA coding downstream 128873 11833286 ~ 11834344 (+)
AMCG00008791 NA coding downstream 278365 11982778 ~ 12002806 (+)
AMCG00008798 tuba4l,LOC105008555,LOC107706828,LOC107669576 coding downstream 408971 12113384 ~ 12126602 (+)
AMCG00008795 NA coding downstream 428073 12132486 ~ 12143358 (+)
AMCG00008800 NA coding downstream 525114 12229527 ~ 12235458 (+)
G51446 NA non-coding upstream 228571 11465812 ~ 11466083 (+)
G51298 NA non-coding upstream 637218 11020216 ~ 11057436 (+)
G51283 NA non-coding upstream 741234 10951077 ~ 10953420 (+)
G51265 NA non-coding upstream 784009 10867935 ~ 10910645 (+)
G51252 NA non-coding upstream 890547 10803906 ~ 10804107 (+)
G51483 NA non-coding downstream 8299 11712712 ~ 11716482 (+)
G51582 NA non-coding downstream 357661 12062074 ~ 12062289 (+)
G51584 NA non-coding downstream 371075 12075488 ~ 12077513 (+)
G51586 NA non-coding downstream 374284 12078697 ~ 12080204 (+)
G51614 NA non-coding downstream 486320 12190733 ~ 12249909 (+)
G51445 NA other upstream 229166 11460363 ~ 11465488 (+)
G51297 NA other upstream 653980 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 848218 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 922979 10692377 ~ 10771675 (+)
AMCG00008725 NA other upstream 1756902 9915494 ~ 9937752 (+)
AMCG00008810 NA other downstream 835185 12539598 ~ 12549618 (+)
G51734 NA other downstream 1011081 12715494 ~ 12716786 (+)
G51756 NA other downstream 1138302 12842715 ~ 12846233 (+)
G51812 NA other downstream 1220825 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 1276391 12980804 ~ 12992725 (+)

Expression


Co-expression Network