AMCG00008798 (tuba4l,LOC105008555,LOC107706828,LOC107669576)


Basic Information

Item Value
gene id AMCG00008798
gene name tuba4l,LOC105008555,LOC107706828,LOC107669576
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12113384 ~ 12126602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008798
atgaagGCCTTCATGAGGGAGTGCATTTCCATCCACATTGGCCAGGCAGGGGTGCAGATGGGCAATGCATGTTGGGAACTGTACTGTCTGGAACATGGATTCAAGCCTGATGGAACCCTGGATGGTGTGGAGCTTGTGGACCAAGTGGACTCCTCTTTTGGCACTTTCTTTAGTGAGACGGGAGCTGGGAAACATGTGCCCAGAGCGGTGTTCATAGACCTGGAGCCAACTGTTATAGGGTATGGGGAAGCTTTGATCAGGTGA

Function

symbol description
tuba4l Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBAL3 (tubulin alpha like 3).

NR:

description
PREDICTED: tubulin alpha-8 chain isoform X1

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008798 True 264 mRNA 0.52 3 12113384 12126602

Neighbor

gene id symbol gene type direction distance location
AMCG00008791 NA coding upstream 110578 11982778 ~ 12002806 (+)
AMCG00008787 NA coding upstream 279040 11833286 ~ 11834344 (+)
AMCG00008782 LOC107563942 coding upstream 494529 11602415 ~ 11618855 (+)
AMCG00008783 r3hdm2 coding upstream 513747 11567858 ~ 11599637 (+)
AMCG00008778 NA coding upstream 721355 11369713 ~ 11392029 (+)
AMCG00008795 NA coding downstream 5884 12132486 ~ 12143358 (+)
AMCG00008800 NA coding downstream 102925 12229527 ~ 12235458 (+)
AMCG00008799 LOC106565462,LOC106583300,LOC105016995,LOC108424631,LOC106567065 coding downstream 110029 12236631 ~ 12237359 (+)
AMCG00008804 hoxc13,LOC107715003 coding downstream 211284 12337886 ~ 12338736 (+)
AMCG00008803 NA coding downstream 232125 12358727 ~ 12359365 (+)
G51586 NA non-coding upstream 33180 12078697 ~ 12080204 (+)
G51584 NA non-coding upstream 35871 12075488 ~ 12077513 (+)
G51582 NA non-coding upstream 51095 12062074 ~ 12062289 (+)
G51483 NA non-coding upstream 396902 11712712 ~ 11716482 (+)
G51446 NA non-coding upstream 647301 11465812 ~ 11466083 (+)
G51614 NA non-coding downstream 64131 12190733 ~ 12249909 (+)
G51665 NA non-coding downstream 299331 12425933 ~ 12426222 (+)
G51673 NA non-coding downstream 312249 12438851 ~ 12439523 (+)
G51685 NA non-coding downstream 377314 12503916 ~ 12504176 (+)
G51710 NA non-coding downstream 432869 12559471 ~ 12559699 (+)
AMCG00008784 NA other upstream 408971 11694654 ~ 11704413 (+)
G51445 NA other upstream 647896 11460363 ~ 11465488 (+)
G51297 NA other upstream 1072710 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1266948 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 1341709 10692377 ~ 10771675 (+)
AMCG00008810 NA other downstream 412996 12539598 ~ 12549618 (+)
G51734 NA other downstream 588892 12715494 ~ 12716786 (+)
G51756 NA other downstream 716113 12842715 ~ 12846233 (+)
G51812 NA other downstream 798636 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 854202 12980804 ~ 12992725 (+)

Expression


Co-expression Network