AMCG00008799 (LOC106565462,LOC106583300,LOC105016995,LOC108424631,LOC106567065)


Basic Information

Item Value
gene id AMCG00008799
gene name LOC106565462,LOC106583300,LOC105016995,LOC108424631,LOC106567065
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12236631 ~ 12237359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008799
ATGGACCTAGAGGAACCCCAGAAAGTGGACCGGCTGCAGGAGCCGCTGCTGGAGGCCCTGAAGCTGTACGCCCGGCGCCGGCGCCCCAACAAGCCACACATGTTCCCCCGGATGCTCATGAAGATCACTGACCTGCGCGGCATCAGCACCAAGGGAGCGGAGCGCGCCATCACCCTGAAGATGGAGATCCCTGGCCCCATGCCACCGCTCATCCGAGAGATGCTGGAGAACCCAGAGGCCTTTGAGgagaagcagcagcaggaggagaagGACCGAGccgctgctgccgctgctgccGCCGCAGCCACCGCCAACCCGGCTGCTGCCCCGGCCATCAAGCAGGAgcgcgaggaggaggaggaggtggaggcgGGGGCCGAGAGCGGCACTGAGCCCCCcgaggaggacgaggacgaggaggcGGGGAGGGCAGGagtggagaaggaggaggaggaggaggagagggagtgGGACAGCGAGGGGGAGGCGCGGGGACAGCCCCCCAGCAGAGAGACCGCGAGGAAGAGCCACGGGGGCCGAGCACAGTGA

Function

NR:

description
retinoic acid receptor gamma b, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008799 True 549 mRNA 0.68 2 12236631 12237359

Neighbor

gene id symbol gene type direction distance location
AMCG00008800 NA coding upstream 1173 12229527 ~ 12235458 (+)
AMCG00008795 NA coding upstream 93273 12132486 ~ 12143358 (+)
AMCG00008798 tuba4l,LOC105008555,LOC107706828,LOC107669576 coding upstream 110029 12113384 ~ 12126602 (+)
AMCG00008791 NA coding upstream 233825 11982778 ~ 12002806 (+)
AMCG00008787 NA coding upstream 402287 11833286 ~ 11834344 (+)
AMCG00008804 hoxc13,LOC107715003 coding downstream 100527 12337886 ~ 12338736 (+)
AMCG00008803 NA coding downstream 121368 12358727 ~ 12359365 (+)
AMCG00008808 hoxc11,hoxc11a,LOC108433364 coding downstream 148221 12385580 ~ 12386302 (+)
AMCG00008809 NA coding downstream 162053 12399412 ~ 12415105 (+)
AMCG00008807 NA coding downstream 185355 12422714 ~ 12423406 (+)
G51586 NA non-coding upstream 156427 12078697 ~ 12080204 (+)
G51584 NA non-coding upstream 159118 12075488 ~ 12077513 (+)
G51582 NA non-coding upstream 174342 12062074 ~ 12062289 (+)
G51483 NA non-coding upstream 520149 11712712 ~ 11716482 (+)
G51446 NA non-coding upstream 770548 11465812 ~ 11466083 (+)
G51665 NA non-coding downstream 188574 12425933 ~ 12426222 (+)
G51673 NA non-coding downstream 201492 12438851 ~ 12439523 (+)
G51685 NA non-coding downstream 266557 12503916 ~ 12504176 (+)
G51710 NA non-coding downstream 322112 12559471 ~ 12559699 (+)
G51718 NA non-coding downstream 409164 12646523 ~ 12647964 (+)
AMCG00008784 NA other upstream 532218 11694654 ~ 11704413 (+)
G51445 NA other upstream 771143 11460363 ~ 11465488 (+)
G51297 NA other upstream 1195957 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1390195 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 1464956 10692377 ~ 10771675 (+)
AMCG00008810 NA other downstream 302239 12539598 ~ 12549618 (+)
G51734 NA other downstream 478135 12715494 ~ 12716786 (+)
G51756 NA other downstream 605356 12842715 ~ 12846233 (+)
G51812 NA other downstream 687879 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 743445 12980804 ~ 12992725 (+)

Expression


Co-expression Network