AMCG00008808 (hoxc11,hoxc11a,LOC108433364)


Basic Information

Item Value
gene id AMCG00008808
gene name hoxc11,hoxc11a,LOC108433364
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12385580 ~ 12386302 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008808
ATGTTTAACTCGGTCAATCTGGGCAACTTCTGCTCCCAGACTCGCAAAGACAGGACTTCCGACTTTGGGGACAGAGCGGCTTGTGCCTCCAACCTCTACCTCCCCAGCTGCACCTATTACGTCCCCGAGTTTTCCGCGGTCTCCTCGTTTCTGCCACAGGCCCCGTCTCGACAGATCACCTACCCGTATTCCACAAACCTGACTCAAGTGCAGCCGGTCCGGGAGGTTTCCTACGGCTTGGACCCTTCCAGCAAGTGGCATCACCGAAGCAACTATGCGTCCTGCTATTCAGGAGAGGATCTGGTGCATAGGGATTGCCTCCCGCCCTCCACCATGACCGAAATGCTCATGAAAAACGAGAGCGTGTacagccaccaccaccaccaccaccaccccggCACCAACCACCCTTCCTCGGGCTTCTACTCCAGCGTGGGGAAGAACAACGTCCTCCCGCAGGGTTTCGATCGCTTTTTCGAGGGCGCCTACTGCAGCGCCGACAGCCAGCCCGAGAACTGTTTACAAAAGAGCGAGGCGAGCAAGCTGGAGCCGGAGACGCAGGCTAGCGAGCTCCCCGGCGCCGCAGACCCGGAAAAGGACCCggaggatgaggaggaaaaCACAAACTCGGGCTCATGCACCTCTTCCTCAGGCACGAAGGACGGCAGCGGCAGCAAGAACAACCACTCGAGTAGGTACCGAGCCGTAAATGGGAAAGGTTAA

Function

symbol description
hoxc11a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in neural tube; tail bud; and ventral mesenchyme. Orthologous to human HOXC11 (homeobox C11).
hoxc11 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-C11a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008808 True 723 mRNA 0.59 1 12385580 12386302

Neighbor

gene id symbol gene type direction distance location
AMCG00008803 NA coding upstream 26215 12358727 ~ 12359365 (+)
AMCG00008804 hoxc13,LOC107715003 coding upstream 46844 12337886 ~ 12338736 (+)
AMCG00008799 LOC106565462,LOC106583300,LOC105016995,LOC108424631,LOC106567065 coding upstream 148221 12236631 ~ 12237359 (+)
AMCG00008800 NA coding upstream 150122 12229527 ~ 12235458 (+)
AMCG00008795 NA coding upstream 242222 12132486 ~ 12143358 (+)
AMCG00008809 NA coding downstream 13110 12399412 ~ 12415105 (+)
AMCG00008807 NA coding downstream 36412 12422714 ~ 12423406 (+)
AMCG00008806 hoxc8,hoxc8ab coding downstream 48321 12434623 ~ 12435063 (+)
AMCG00008805 hoxc6ba,LOC108433405,LOC103034651 coding downstream 76736 12463038 ~ 12465622 (+)
AMCG00008812 NA coding downstream 82514 12468816 ~ 12469543 (+)
G51614 NA non-coding upstream 135671 12190733 ~ 12249909 (+)
G51586 NA non-coding upstream 305376 12078697 ~ 12080204 (+)
G51584 NA non-coding upstream 308067 12075488 ~ 12077513 (+)
G51582 NA non-coding upstream 323291 12062074 ~ 12062289 (+)
G51483 NA non-coding upstream 669098 11712712 ~ 11716482 (+)
G51665 NA non-coding downstream 39631 12425933 ~ 12426222 (+)
G51673 NA non-coding downstream 52549 12438851 ~ 12439523 (+)
G51685 NA non-coding downstream 117614 12503916 ~ 12504176 (+)
G51710 NA non-coding downstream 173169 12559471 ~ 12559699 (+)
G51718 NA non-coding downstream 260221 12646523 ~ 12647964 (+)
AMCG00008784 NA other upstream 681167 11694654 ~ 11704413 (+)
G51445 NA other upstream 920092 11460363 ~ 11465488 (+)
G51297 NA other upstream 1344906 10984890 ~ 11040674 (+)
AMCG00008752 LOC107666323 other upstream 1539144 10828568 ~ 10846436 (+)
AMCG00008749 krt8,LOC108429286,LOC107705699,LOC107666380,LOC107681386,LOC107559866,LOC108411779,LOC106935308,LOC103152763,LOC102227940,LOC106915440 other upstream 1613905 10692377 ~ 10771675 (+)
AMCG00008810 NA other downstream 153296 12539598 ~ 12549618 (+)
G51734 NA other downstream 329192 12715494 ~ 12716786 (+)
G51756 NA other downstream 456413 12842715 ~ 12846233 (+)
G51812 NA other downstream 538936 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 594502 12980804 ~ 12992725 (+)

Expression


Co-expression Network