AMCG00008824


Basic Information

Item Value
gene id AMCG00008824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12820798 ~ 12840200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008824
cacacacacactgacaggtaTAACCAGGTTACAGAGAGCGAgcgcgagagagaaagagagcaacaGACTGTGTCTAAAGGAACGCAGAACTCCAGAGTCAAACTTTGTCCAGCCACACACGGCAAGGCAAGAAagtagagagagggggggagaaaaagagagggagaaagacaaGACCAGGCAACCATAAGGCAGTGAGCTAGCAGCAGTGAGTGATGGCAGCCAGTCCGTTCAGCCGGCGGCAGTGGGGGTCACAGTCTCTGCGCATCACCGCCAAGGAGCTGTCCATCGTCAGCACCCGCGGCAAGAACACAGCCATCGCTGAGAGGTTCTCCAAGTATCAGAAGGCTGCAGAGGAGGCCAATGCAGAGAAGAAGAAACCTCCGGTGATCAGCGTCGCTGCCGCTGTAGAGAAACTCCAGCGTCGCTCCAGGGCGTCACAGAACGGCAGCGGCCCCAGCATTGAACCGCTGCCCTCCAGCTTGAGGCGGGGCAACCTGAGCGTGTTGAAAAAGAGGTGGGAGCAGCCACCACCCCCTGCCCACCAGGACCACCCCCCTGTGCCTAACCCTGTCCCCCGTGCCCGCCTCAATACCCCGCCTCCCGTGTCCAGCATCGCCAAGCCCCATCCCAGCCCCGGACACGCCCCCGggcccagccccagccccagtcCCGGTCAACAAAGCGTGGCTGCCACTAGGCCTCCAGGCCCCGAGTCCAGCCGCTTTCACTACCCCAGCCAGGGGGAGGGAGTGGCGGAGCAAGAGGGTGGGGTGTCGGAGGTGTCGGCCATGGAGAGGAGgctgtggagagagggagacggggcGGAGAGTGAGGGCCGGACAGGTGGTGCCAGCTCCCCGGGGGGCAGCGTCCACATCGAGAAGCCCAGCGTGCCGCTCACCAGCCTCAAGATGATGTTCGAGAAGGGGGAGGGGACACCCAGCAAGGTGTCCCGGGAGCCAGTCAGGATCGGGGGCTACAGCAACTCCACAGAGGACATGGAGCTGCGCCTGGGAGACAGAGGTCAGTTGGATGGGCTGTCGGGGTGCTCCACCCCAGAGCGGCTGCTGGAGGCCACCTCTCTGAAGGACCGAATGGCTAAGTACCAGGCCGCAGTGACCAAGCAGGAGGCCCTGCCCCCCGCCCACAGTAACAGCAGGAAGGGCTCCGTAGTGGAGAGCAATGGCACACGAATGGAGGGTGAGGGGGAGGTGAGAAAGATGTCTGCCTGCAGTGGGAACACGCAGACCTCGTCCGACAGTGGTGCACCCAGAGCACTCAGGAGGTTCTGCCCACCTGTGCGTGAGTCATGTGTGTCGTGTCAGAAAACCGTGTACCCGTTGGAGCGCCTGGTGGCCAATCAGCTAGTGTTTCACAAGGCCTGCTTCCGCTGCTCCCACTGCAGCAACCGTCTGAGCCTGGGGAACTTCGCCTCCCTGCATGGCAGTGTGTACTGCAAGCCGCACTTCAGCCAGCTGTTCAAGGCCAAGGGAAACTACGACGAGGGCTTCGGACACCGGCCGCACCGTGAGCTGTGGAGCGCACGCTctgagggggaggaggaggatgaggaggtggggggggagagagcaGGAAGTGccgaggaggtggaggagaagaaggagcgagggggaggggggcgggaGCGTTCCTTAGAAACGGCCTCCCCCGTGAAGCAGCAGAGCCCCCTAGTGGAGGAGTGCCCCCTGGCCAAGGTTAATGTCCTGGCCGCCAGCCTGGAGACTCGGGCACAGTTTGTCCCCGTGCCAGAGAGGGCCCCCGTGGACAAGCCAGCCGAGACCCGGAGGCTGAGGATCGCCTGGCCTCCCCCGAGTGACGAGGGCGAGAGGGCTCAGGGGGGCAGTCCCGTGAGTGGCGGGGGGGAGCTGGTAGGGGTCTCTTCCCCATTGGTACGCCCCTTCCGTGCCAAGTGGCCCCCTGATACGGAggcagaggtggggggggtgcagCAGAGCCCTGAGCGCAGTGAGATCAGCCGGCTACGCAGGAGCGCCTCCCTGAAGGAGAGGAGCCGGCCCTTCAGCCTGGCCCCTAGCCCCACCGCTGCCCCCACCCCCGCACCTGCACCCAGACGCCAGCAGAGGGAGCCAGGGGGCAGTGCAGCCCGACCACAGCCGGAAGAAGCAGAGAGGGAGGGCCGTCCCACACCAGCGCCGCGCAGCAAGGAgaggcagcaggaggaggaggaggaggagagggtggaaaaggagaggaaggagagggaggagaaggagaagaagcagAGGGAGGAGGCAAAAAGGAAAGAgcaggaggaggtggagaagaaggagagggaggaggtggagagggtggaaagagaaagaagggtgcgagagagggaggagaaagagagggaggaggtagagaggaaggagagggtggaaagagaaagaagggtgcgagagagggaggaggtagagaggaaggagagggtggaaagagaaagaagggtGCAtgtggagaaagagagggaggaggcaCTCTCCACTCAGGACAGTGTGCTGAATGGGGAGATGGCttcagaggaagaggaggaagcaaagactaaatgtagagagagggaggaggaggaggaagaggaggaggaggaagagctggAGCAGCCCTCCCCCGCCATGGCAGACCTCCATGCCTCACCCCCCTCACCCTCAAGCCAGGACGCCAAAGCTGACCGCTCCTTGCAAGACGTGGGCTTCTGGGaaggggaagaggaggaggagggccaAGGAGTGTCCGTGGAGGACCTGATCAAGAGAAACCGCTACTatgaggaggaagaagaggaagaggaggagagggaggactGA

Function

GO: NA

KEGG:

id description
K23026 LIMA1, EPLIN; LIM domain and actin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008824 True 2831 mRNA 0.63 11 12820798 12840200

Neighbor

gene id symbol gene type direction distance location
AMCG00008825 NA coding upstream 10370 12803269 ~ 12810428 (+)
AMCG00008820 copz1,LOC105907582,LOC107664248 coding upstream 127297 12688197 ~ 12693501 (+)
AMCG00008813 NA coding upstream 158347 12660779 ~ 12662451 (+)
AMCG00008814 hnrnpa1 coding upstream 161066 12654567 ~ 12659732 (+)
AMCG00008819 NA coding upstream 251111 12569028 ~ 12569687 (+)
AMCG00008828 NA coding downstream 50802 12891002 ~ 12895612 (+)
AMCG00008830 pip4k2c,LOC103385206 coding downstream 59695 12899895 ~ 12907881 (+)
AMCG00008829 NA coding downstream 69485 12909685 ~ 12912736 (+)
AMCG00008831 NA coding downstream 118557 12958757 ~ 12962983 (+)
AMCG00008836 NA coding downstream 156898 12997098 ~ 13002084 (+)
G51736 NA non-coding upstream 75032 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 97818 12721082 ~ 12722980 (+)
G51718 NA non-coding upstream 172834 12646523 ~ 12647964 (+)
G51710 NA non-coding upstream 261099 12559471 ~ 12559699 (+)
G51685 NA non-coding upstream 316622 12503916 ~ 12504176 (+)
G51796 NA non-coding downstream 56149 12896349 ~ 12897107 (+)
G51814 LOC106567079 non-coding downstream 87418 12927618 ~ 12927845 (+)
G51828 NA non-coding downstream 138664 12978864 ~ 12980775 (+)
G51904 NA non-coding downstream 300363 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 469416 13309616 ~ 13310773 (+)
G51734 NA other upstream 104012 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 271180 12539598 ~ 12549618 (+)
AMCG00008784 NA other upstream 1116385 11694654 ~ 11704413 (+)
G51445 NA other upstream 1355310 11460363 ~ 11465488 (+)
G51297 NA other upstream 1780124 10984890 ~ 11040674 (+)
G51756 NA other downstream 2515 12842715 ~ 12846233 (+)
G51812 NA other downstream 85038 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 140604 12980804 ~ 12992725 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 382120 13222320 ~ 13224946 (+)
G51939 NA other downstream 413614 13253814 ~ 13257640 (+)

Expression


Co-expression Network