AMCG00008825


Basic Information

Item Value
gene id AMCG00008825
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12803269 ~ 12810428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008825
ATACCGGCTGTGTTTTAAAAGGCAGCGGGCAAAGCTGGGCTTGAATTTGTGAATTGCAGATGTTGGAGTGGCGATAGTCAACTGGGATCACAAAAATGGTTTTAATCACACTGATCCTGTACATCGTGCTCATTTCTGTGCTGCCAGTGATGAGTCTGACCCAAGGGTGCAAAGACAATGAGATCCAAACTCCATCAGGTTGCTGTTCGACTTGTGGGACAGGGCAATTCATATCAAATATTTGCTTTGAAGATCGAGGCGTGACCTGCAGTGACTGTAAAGCCTGCAATGGCAAGAACCAGATCCTCATCACCAGTTGCACTCCTCTCAATGACAGTGTGTGTGGCTGTCGGGATAACTACGATATCGCCAGCAGTGGAGAGTGTCGTGGACGACGGCTCCAGAAGATTCCGAACACGGCTGTATGACGGAACCAGTGGCAGCAGATGGGAATGTTATTGGAATTTGTAGCTGCTGGGCTTTAACAACACTACTTCAAACACACTGCCCTTCACTGTACAGCAGGGGACGTACTACTATCCTTCTATATATACTTCTCTGACCTTCTGGACGTAAGCAAGTCTGCAGCTAATCCACAGTTTCCAGTCTGaggtttttaataaaattattttaaagtagctCGGTTAGAAATTTGAAACAACTGAAAGTATGCTTCATGGTCTGAGGCTAAATATTCTCCCCTCTGTccatcatttaaaatcaatataggcaaaacaaaagagacagagagggagacggaggCAGTGATAGACAGGGAGCGAGTGGCAGcaatggagagggagggaaggtgAGAGGGCAGTGAtggagagaaagtgagagggcagcgatggagagggagagagtggcaGCGatcgagagggagagggagtgaagGCGAGAGAACAGTGATAGAGAAATGGGGACGTGATGATCCTGGCAGTGTTTGATATTCTGTAAACCATGGACAGTTGTTTTGACTGTATTTATGCTGGCAGGCCAATTTGCATTCAGAGCATAGATATTTATCACATAGTCACCTCCTTACTACCAAACATGGTGGTGTTactaattaatgaattaaatgtatatatatattattgcaaGGGCACTCCTTGCCCtctctgtgtgctgcaggtTCTAAAAGCGTTGCAATATGGCCTGCGAGTGGCCAGCCATCACATCTGAGATCAGGGAAACTAGGATGTAGTAATGATACTGCCAGaggatgaataataataattcctcaTGAGAAAATATGTGGATGCGTCAAAATATAggataaattatacatttgtatattattttgattaacagttatttggaatgtgaaaactgtaaaagtTTGCAATGGAAGAGTAATGTTATAACAGAGTACACTATCAAAAACATGACTTCATATCACTCGACACCCCTATAGCCTTCTGGACCTCCTATATAATGCACTAATCTCCACAAGCTCCTTTTGAGTCATTCAACCTTTGAAAGGCTGCTAGAATTGGTTAAATGAGCTTAAATGAGTCTATCACCACCTTGTGGACACTCTGAAATGCTGTAATCCGTTGGAAGGTTTtatatccattttattttgtattcattaccacatgttcagggttttattttgcacttttttacAATTTGCTCTTGAAAGCATTGTTAAGGGATTTATAATCCTATTTCTGTGCTCTAGCTACACTCTTTTATAAGGACTTGGCTCAGAGCACCATGCGAAGTAGGCCAGATGACCGTGATCACCGATTtgcatgtatacattatattaatgaataagtaaagtaaagtaagtaAAGCTTAGACAGTTCTTTTCCAGGGAACAAATCCACTGGATAGTAAAAATCTATGTTAGACGACTAAAATGTGAAGAGaaatttatctttttttcttttatccaCGCTGCAGACAGCATCAGCTTTGCACCTCTGATATCACAATAAATAGCAAGTTGCACACTGCTGCAGGGGTGTTCGACGCCCGCCTTGGGGGGAAGCACAGTGGCTGCTGGTTTATGTCCCAACAGCATCTCTCAACTATTCAATTAGTCATGGTTTTCTCAAGTAGGCTTATCTAAGACTTtctcattttagttttaaagttcATGTCTTCAAATATGTCGATTTACTCCAGCTATATTGTTcccacaaaacatttcagagtctggagagaagtttTCAATTCATTcagttaataatttaattaggcCAATTAAGGGGCCAaaagctgggctggaacaaaaaccaggagacaccccagccccccaggactggagtctaaCTGCCCTGCTATAGTGGAATGACCTTAAACTGATTGATAGTTTTAGTAAAGTTCCTTTAGCcgagtggttctcaaacctctCCCGGAGTACCATCTAcccagctgtttttttttttttttttgagctctcaattacttaattgattccttaattgatgtaatttgactctttaaattgatcaaaagttggttccttaatattTTCCTTCTATAATTTATACTTATCTTAAAACCCCTATTGTTATGTATTAAAAGGTTctgatttagaaaaatgttaGTTCATTTAAGgggtcaattaattaattgagagcttggttggaacaaaaaccagcagggtaggtagtactccaggacaggtttgagaaccactggttaAGCCTGTAtatcaggggtggctaaccctggtcctggagagctgcagggttaactgcttaattgaaccaattgtgggtgtttattaggcaaaatgtccagTGTGTTCAAGATGTCCAATGATTGGTagttagagagacctggaaaacctgcaggattgcggctttccaggaacagggttgggcACGTGTGCATGTGTAATACATTATACTCGCACACATACATAGTTTTAAAAAGTCAGTTGGTGCAAAGTTGAAGTGAAATCTCTCTCAATTAATTGTTCCACAGCCAGGGTGAAGTCCCTGTGCAAACAGTATATGCACTATGATAACTAGAATGGTATAATGACAATATGATAGCTGAAGTAATGGGATGAAACTCCGGACGCCAAAATACAAGTTATAGATGCGGGGGTGCCAGGCCAGCAGGTTCTGCTGCAGGAGGGAGAGCGAAGTAAATTGCTGGTGAATGTTTATAAGCACCCATGGGGGTGGAGAGGAAGACCAGTGACTTCTTTTGTAGGACGATAGCTGGGGAATTATAATTGGGATTCATTTGGAGAAAAGAGAACTGGATTGACTTCCAATGCTTCTGCTTATGTTGAAACAATCCTGTAAGCATTGCACTGCCACCATCCGAGTATTGTAATCAATGACAGATTCCTGCATCTCTTacaatccattttaaaatgttttttttttttttcaaaatgtaaaaataataatcaaaatctgCATTGAAAATGTCACGACCCACATTGGGATGAAGTTATTAACAATTCATTATTCTTCTATTAGGAGATTTATAGAATAACAAATGGAGTAATGGGTGGATAGATGAATGCATAGATCGATAGACAGAATAATTAGTCTTTTTTTATCAATAATgtgtaattgattgattaatgagCTTTTGAGTTCTATTAATAacctgaaataataataaacttataATAACCTGAGAAGCAACATTTATGTGCCCAAATCAAAAACTGACTGTTATACCTCCCAGCTGTGTGATctttgtcatttttcacatcTGACAATGCTATCATAAGGGGATGTTGTGTCATGTTTACAAATTGTGGAGATTcaatataatgttgtttttgaaaataaataaagcattggCTCTCTTAACCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008825 True 3802 mRNA 0.40 5 12803269 12810428

Neighbor

gene id symbol gene type direction distance location
AMCG00008820 copz1,LOC105907582,LOC107664248 coding upstream 109768 12688197 ~ 12693501 (+)
AMCG00008813 NA coding upstream 140818 12660779 ~ 12662451 (+)
AMCG00008814 hnrnpa1 coding upstream 143537 12654567 ~ 12659732 (+)
AMCG00008819 NA coding upstream 233582 12569028 ~ 12569687 (+)
AMCG00008811 hoxc4 coding upstream 298240 12504256 ~ 12505029 (+)
AMCG00008824 NA coding downstream 10370 12820798 ~ 12840200 (+)
AMCG00008828 NA coding downstream 80574 12891002 ~ 12895612 (+)
AMCG00008830 pip4k2c,LOC103385206 coding downstream 89467 12899895 ~ 12907881 (+)
AMCG00008829 NA coding downstream 99257 12909685 ~ 12912736 (+)
AMCG00008831 NA coding downstream 148329 12958757 ~ 12962983 (+)
G51736 NA non-coding upstream 57503 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 80289 12721082 ~ 12722980 (+)
G51718 NA non-coding upstream 155305 12646523 ~ 12647964 (+)
G51710 NA non-coding upstream 243570 12559471 ~ 12559699 (+)
G51685 NA non-coding upstream 299093 12503916 ~ 12504176 (+)
G51796 NA non-coding downstream 85921 12896349 ~ 12897107 (+)
G51814 LOC106567079 non-coding downstream 117190 12927618 ~ 12927845 (+)
G51828 NA non-coding downstream 168436 12978864 ~ 12980775 (+)
G51904 NA non-coding downstream 330135 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 499188 13309616 ~ 13310773 (+)
G51734 NA other upstream 86483 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 253651 12539598 ~ 12549618 (+)
AMCG00008784 NA other upstream 1098856 11694654 ~ 11704413 (+)
G51445 NA other upstream 1337781 11460363 ~ 11465488 (+)
G51297 NA other upstream 1762595 10984890 ~ 11040674 (+)
G51756 NA other downstream 32287 12842715 ~ 12846233 (+)
G51812 NA other downstream 114810 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 170376 12980804 ~ 12992725 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 411892 13222320 ~ 13224946 (+)
G51939 NA other downstream 443386 13253814 ~ 13257640 (+)

Expression


Co-expression Network