AMCG00008830 (pip4k2c,LOC103385206)


Basic Information

Item Value
gene id AMCG00008830
gene name pip4k2c,LOC103385206
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12899895 ~ 12907881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008830
CTGTTACCTGCACCTCACTCACCTGGCCGCCCGCAGCTGGTCATGTGACGGGGGTGGGTGGAAGCAGGTGAGCCGAGGGAGAAGTTCCTGTTGATACACAGCTGTCGTGGTCgttttgtccccccccccccaccaccaccaccgacacacatttacagtttttactACTTGGAGAGCGGAGAAAGAGGGAGCGAGTGGAAGAGAgcgacagggagggagggagagaaagagcgaGAAGGGGGAAGGGTGCCGTGAAAGTGAGAGTGCGAaacagaccgagagagagagagaacgattTGAGAAGACTCGACCGACTGAGCACCGCGACACGCAGAAATAACAGCCCCACAGACAGCAGAGAGGACAGGAAGAGACACAGGCGGGTCGAGGGGGAAAGataacaaaccaaaagaaaagaaaaaagttaccGGCAAGCGTTCTTTACGGGCTCGCACCGCAGCCCCCTTCCCGCTCCACTGCCACCCTTCCCCGGTCCGCCGGACTCGGGCTCCGCGCTCTCATGGCGTCGGCCGGCGGCTCCAGCGGCGGCTCTGGCCCGATGGTCATTCTGGCTcccaagaccaagaccaagaagAAGCACTTCGTGCAGCAGAAAGTCAAGGTGTTCCGCTCCAGCGACCCGGTGCTCAGCGTCTTCATGTGGGGGGTCAACCACTCCaTCAATGACCTGAGTCAGGTGCCTGTACCGGTGATGCTGTTGCCTGACGACTTCAAAGCCAACACCAAAATCAAGGTGAACAATCACCTGTTCAACAAGGAAAATCTTCCGGGACACTTCAAGTTCAAGGAGTACTGTCCACAGGTGTTCAGGAACCTGCGGGAGAGGTTCGGCATCGAGGACCAGGACTATCAGgtgtCTTTGGCCCGCAGCCCCCCGCTGGGCTCAGGAGAGGGTcggggggaggggttactgctGACCTCATATGACCGCACCCTGGTGGTCAAGCAGATCTCCAGCGAGGACGTCGCCGACATCCACAGCATCCTGTCCCAGTACCACCAGCACATTGTGACGTGCCACGGCAACACGCTGCTGCCACAGTTCCTGGGGATGTACCGGCTGGGTGTGGACAGTGAGGACACCTACATCTTGGTCATGAGGAACATGTTCAGCCATCGGCTCCATGTGCACAGGAAGTACGACCTCaagGGCTCACTGGTGTCCAGAGAAGCAAGTGACAAAGAGAAGGTGAAGGAGCTGCCCACCTACAAGGATGTGGACTTCAGGAACAACATGCAGAAGGTGTACGTCAGTGAGGAGCAGAAGGAGAAGTTCCTGGAGAAACTCAACCGTGACGTGGAGTTCCTGGTGCGCTTGAAGATCATGGACTACAGCCTGCTGCTGGGGATCCACGATGTGTCCCGGGccgagcaggaggaggaggaggaacaggcGAGCGGGGAGGAGGCAGAGCCTGAGAACGGGGTCTCCGGCCCGGTCGTGGGTTCCTACGGCAACTCCCCCGAGGGTATCGCTGGGTACCTAAATGCACACAAGCCCCTGGGACCGGGCGAGTTCGACCCTTACATCGATGTGTACGCCCTGAAGAGCGCACCCAGCGCCCCCCAGAGGGAGGTGTACTTCATGGGGCTGATCGATGTGCTGACGCAGTACGACACCAAGAAAAAAGCTGCCCACGCCGCCAAGACTGTGAAACATGGGGCTGGGGCAGAGATCTCCACAGTCCACCCCGAGCAGTATGCCAAGCGCTTCCGAGACTTTATCGCCAACATCTTTGCATAGCGCCCCCTGCCTCCCAGCACTGGTACTGCAGCCCCCAGGGTTGTACCTCACAGCATGAagaagtttttagtttttccattcataaggtttttttttccaatcttccatTCCTACCTCTTTCTGCTATGTTTTGttgatgttatgtttttttttttttggagctgtaaattatacttatttaaaacGGCATGATAAAACCAAACcagaaaaatgataaaataataataaaaaaaaaaagcaaaatgatcaaatataatCTTGTAGAAAACTGTTATTCATATGCTGCGTTTACATGAATAAACCTGTGCAGCTGAGCCGGTGTGGTGCAGGTCCGCAATGTCTCTGTATCCACCTGCTCTGGATCTCCTGTCCACTCTCTGGGCTGGACGCCAGGTCATTCATTTACAATACTGGGGAGTCTGAGCCTGGGTGTGCCTGCAGGAGTTTGAAGGAGGGAGAGTTAGAGAGGAAAGAAATGGATGAAAG

Function

symbol description
pip4k2c Enables 1-phosphatidylinositol-4-phosphate 5-kinase activity and identical protein binding activity. Involved in several processes, including 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process; negative regulation of 1-phosphatidylinositol-4-phosphate 5-kinase activity; and positive regulation of autophagosome assembly. Located in several cellular components, including autophagosome; cytosol; and nucleoplasm.

NR:

description
PREDICTED: phosphatidylinositol 5-phosphate 4-kinase type-2 gamma

GO: NA

KEGG:

id description
K00920 PIP4K2; 1-phosphatidylinositol-5-phosphate 4-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008830 True 2251 mRNA 0.55 10 12899895 12907881

Neighbor

gene id symbol gene type direction distance location
AMCG00008828 NA coding upstream 4283 12891002 ~ 12895612 (+)
AMCG00008824 NA coding upstream 59695 12820798 ~ 12840200 (+)
AMCG00008825 NA coding upstream 89467 12803269 ~ 12810428 (+)
AMCG00008820 copz1,LOC105907582,LOC107664248 coding upstream 206394 12688197 ~ 12693501 (+)
AMCG00008813 NA coding upstream 237444 12660779 ~ 12662451 (+)
AMCG00008829 NA coding downstream 1804 12909685 ~ 12912736 (+)
AMCG00008831 NA coding downstream 50876 12958757 ~ 12962983 (+)
AMCG00008836 NA coding downstream 89217 12997098 ~ 13002084 (+)
AMCG00008838 NA coding downstream 97721 13005602 ~ 13014133 (+)
AMCG00008835 NA coding downstream 155614 13063495 ~ 13065081 (+)
G51796 NA non-coding upstream 2788 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 154129 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 176915 12721082 ~ 12722980 (+)
G51718 NA non-coding upstream 251931 12646523 ~ 12647964 (+)
G51710 NA non-coding upstream 340196 12559471 ~ 12559699 (+)
G51814 LOC106567079 non-coding downstream 19737 12927618 ~ 12927845 (+)
G51828 NA non-coding downstream 70983 12978864 ~ 12980775 (+)
G51904 NA non-coding downstream 232682 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 401735 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 403448 13311329 ~ 13312458 (+)
G51756 NA other upstream 53662 12842715 ~ 12846233 (+)
G51734 NA other upstream 183109 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 350277 12539598 ~ 12549618 (+)
AMCG00008784 NA other upstream 1195482 11694654 ~ 11704413 (+)
G51445 NA other upstream 1434407 11460363 ~ 11465488 (+)
G51812 NA other downstream 17357 12925238 ~ 12926794 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other downstream 72923 12980804 ~ 12992725 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 314439 13222320 ~ 13224946 (+)
G51939 NA other downstream 345933 13253814 ~ 13257640 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 398614 13306495 ~ 13309430 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021880 pip4k2ca coding NC_007134.7 CM002907.2 36616717 ~ 36645135 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding CI01000001 null 1976716 ~ 1993561 (-)