AMCG00008832 (zbtb39,LOC102796472,LOC106567078)


Basic Information

Item Value
gene id AMCG00008832
gene name zbtb39,LOC102796472,LOC106567078
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12913536 ~ 12917796 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008832
GGGCCGGGCTACGCGTCCAGCCTGCTGACCGAGCTCAACCGCTGCCGGCTGTCGCGCTCGCTGTGTGACGTGCAGCTCCAGGTGGGGGGGCGCTCCTTCCCCGCCCACCGTGCCATCCTGGCCTGCGCCGCTGCCTACTTCCGGGGCTTGTTTGCAGCCGGCGGAGAAGCGGGGCAAGATGGCGGTGGCAGCGTCCGGACCTTTGAGGTGGACTTCGTGTCGCCGGCGAATTTCGAGAAGGTGCTGACGTTCATCTATACGGCCGAGCTGTTCACGGAGCTCGTGGATGTGGGCGTGCTGTACGAGGTGGCCGAGAGGCTGGGTGTGCGGGAGCTGgccccctccttctcctccacctccctctccctctctacctcCACTTCCACTTCCCCTGCTCCTTCTgcccccatccctctctccctggtCCCGAAAACAGAGGATGAGGAATCTCTTATGGAGTACTGTCAGGCATCCGCCCCCAGCCAGCCCCTGGTGCTGCCATCCCCCGCAAACGGTCACCCCTCCTGCACAGAAATAGAGTCCCTGCCCCCACTGGGCCCCCTGCACTGCCTCAAGACCgaagaggtggacacagaggaAGTTATGAGGGGGGAGAGTGAGGCTGAGGCAAATCAAAAGGGAGAGGGGACACCAGGGGAAGAGTGCACGCCCCAGACCCTGAGCATCTTTGTCCCGCAGGCGTTCCCTGACTCCTCTGCCCAGCTGGGGGAGACCTGTGCCCCCTCATCCTCCTCCGGGGACCCCTTGGATGGGCTGAGACTTGTGGCGGGCGAAGGGGAGCTGGGTGGGGAAGTGGGGGAGGAGGCTGAGGAAGTCGGGCTGGGGGTCAGGGACCTGTTTTTCGAAGATGGGCGTCTGCaagaaggaggagaggaagagaaaggtGGAGGGATGGTGGGTGAGATAATTGAGCTGAGCGATGACGAGGAGCACTATATTGAAGAGCtcgaggaggaagaggaggaggaggaggaggaagacttGGTGTGTCTGGAAAATGAGGACTACAGCACAGGGCGTGGGGCAGGGTCTTTCCGGGCGTGTCAGGCGTGTGGGGCCGTGCTGCCCCCCGATGCAGCTGCCATCCGAGCGCACGCTGAGACTCACCTGTCTGAGAGTGGGGCCTGCCGTCTCTGCGGCATCCACCTGCCCGAGCGCGGCGCCCGGCTGGCCCACGCCCTCTCGCACCTGGGCCTGCCCCTGTACCCCTGTGACCTGTGCCAGCTGCAATTCCACAGCCAGGCCCAGCTCGCACAGCACCGCCGCCACAGCTCTTCCATGTCCGCCCCTGCCCTGCCACTGCTCGCCAGCACCACCCCCAGCACCACCCAGGGGCTCCAAGGGGAACTGCACTGCGCTGTCTGTCACAAAGCCCTCGGCAAGGACTTCCAGGCTGTGAGGGAGCACCTCCTGCAGCACGTGTCCACGTCGTCCCTGCGCTGCGGGGTATGCGAGCGCCTGCTGCCCTCCCTGTGTGCCCTGCTGCGCCACGCCCTCTCCCACCTTGGCCTGGCCCTCCACTGTTGCCCCCGCTGCCCCCGTGCGTTCCTGCAGCGCCCCCTGCTGGCAAGGCACCTGACACTGCACGCCGGGGAGAGAGCGCGGCAGGGAGATGAGGAGGacgaggatgaggaggagggggatggAGGGGCGAGGGAGGAGATACGTTGCTTCCTGTGCCCCCAGGTGTTCCACTCCCCCTTGGCCTTCCAGTACCACCTCAGCCTGCACTCCGGGGAGACTGGGTCAAACCACCCCCAGCAGCGGCAGCACAGCAAGAGGAAGGCAGAGAGCCTGCTGGAGTCTTCCTCCTCCtgttcttcctcctcctcgctgGCAGGGTGCAGTGTCCCCAACAGCCACATGAACGCCCACAGCGACAGCTCTATCAGTAACAGTACAGCGGGCGGTGGCGGTGGGGGGAGGGCGTGCTTCGGAATCCAGGACGGGCTTCTGCTGGGTCAAGGATCTGGCTCGGGTCCCACAAATAGCTTCCCTGCTTTCCCTGGCCCTGTGCCCGCTCCCGGTACCCTCCACCTCCACACCGTACCTCAGGGCCCACCTGCCAAGCCCAAGTGGTACCGGTGCAGATTCTGTGGCAAGCGGTTTGCTCACTCCGGGGAGTTCACCTACCACCTGCGTATCCACACAGGGGAGAAGCCCTACCAGTGTAAGGTGTGCCTGCGCTTCTTCCGTGGTCGCTCCACCATGATCTGCCACCTGAAGACGCACGCGGGGGCACTGATGTACCGCTGCACTGAGTGCGGCCTGTTCTACTCCACGCTGAAGCAGGTGACAGCGCACATGGAGCTGCACCGTGACCGCCTGCCCCCCGACTTCAGCATCGAGAGCACCTTCATGTACAATGACCACTCCAAAGAGCCGCTGCCCCCCGGCCTGGACAGCTGAGCACCCACTCTGTCTCAGGGTGCGGTTCTAGTTCTAGTGCTGCATAACcagaaaactgattttaatatgaatggTATTAGTGTTATTGTTCTTACGacaatgaatatatttattttggaatacctgattataatttttaaaattattttccatACTTAATATTTAACCCcagtttggattttattttatttttttatttttgtattactcttCTTCAACTGCAAGCCAGATCATTTGGGGGGGACATGAAACACAACCACTCTCATGCAAACACATTCTGagatgtgtgtgagagtgtgtgtgtgctgttgacATGTAACACTCTTAAAGGTGAGGTTAATTTAGGTTCAGgttctttataaaaaaattaaataaaaaaaagacctttaaaaaaaaaaaaaaaaaaaacgtaattcaGCACCACTGACACTGGGTGGCAGCACCAGCTGATTTGCCGTGACTTTGTGGGAGAGACGGATTGCTTTGAATGGTGGAGTGCGCGTAAAATATcgtaaacaagaaaaataaagttgaaaacataacaatattttcgaggaaaagtgaaataatggaTGTTGAGATAAAATATTGTTGTAAtgtttgaatttattttccttgtttacaatatattttattttgaattcaccACTTTTGAGCCCCCAGTGTGCCTCAGTGTGACAGACCCATTGCTGCAGTGCCCTGAGGACTTCAGACCCAGAGCTCAGGCTGCTTTCTCCACACTGGCagtgaggttttgttttttcctaaaagatttattttaatcttttacaCATTTGTTGTGTTTGAGAGTCACAATATACGGTactgtttatgtttaaaaacagtatttatacTGTTCTAACaatgttttctgtctgttctgtttagaataaaataaaaacaatcctcaC

Function

symbol description
zbtb39 Predicted to enable metal ion binding activity.

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 39

GO: NA

KEGG:

id description
K10511 ZBTB39; zinc finger and BTB domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008832 True 3341 mRNA 0.56 4 12913536 12917796

Neighbor

gene id symbol gene type direction distance location
AMCG00008826 spryd3 coding downstream 28868 12863623 ~ 12884668 (-)
AMCG00008827 NA coding downstream 57311 12847007 ~ 12856225 (-)
AMCG00008821 NA coding downstream 167574 12739173 ~ 12745962 (-)
AMCG00008823 NA coding downstream 178057 12725524 ~ 12735479 (-)
AMCG00008822 NA coding downstream 192347 12717117 ~ 12721189 (-)
AMCG00008833 NA coding upstream 8797 12926593 ~ 12942236 (-)
AMCG00008834 cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179 coding upstream 48552 12966348 ~ 12969537 (-)
AMCG00008839 NA coding upstream 112774 13030570 ~ 13046587 (-)
AMCG00008846 NA coding upstream 237701 13155497 ~ 13158303 (-)
AMCG00008843 NA coding upstream 256397 13174193 ~ 13180841 (-)
G51809 NA non-coding downstream 5203 12907321 ~ 12908333 (-)
G51724 NA non-coding downstream 253419 12657226 ~ 12660117 (-)
G51707 NA non-coding downstream 363919 12547400 ~ 12549617 (-)
G51706 NA non-coding downstream 373192 12539607 ~ 12540344 (-)
G51700 NA non-coding downstream 409857 12503462 ~ 12503679 (-)
G51811 NA non-coding upstream 2749 12920545 ~ 12920791 (-)
G51851 NA non-coding upstream 5408 12923204 ~ 12924656 (-)
G51875 NA non-coding upstream 104228 13022024 ~ 13023104 (-)
G51946 NA non-coding upstream 251634 13169430 ~ 13213278 (-)
G51950 NA non-coding upstream 291755 13209551 ~ 13211199 (-)
G51799 NA other downstream 16402 12895335 ~ 12897134 (-)
G51797 NA other downstream 21939 12890811 ~ 12891597 (-)
AMCG00008815 NA other downstream 308276 12601291 ~ 12605260 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 1587177 11235642 ~ 11326359 (-)
G51250 NA other downstream 2114382 10797632 ~ 10799154 (-)
G51867 NA other upstream 83030 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 172741 13090537 ~ 13097934 (-)
AMCG00008844 NA other upstream 217936 13135732 ~ 13184356 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other upstream 339902 13257698 ~ 13261822 (-)
G51974 rps26 other upstream 389626 13307422 ~ 13309425 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022545 zbtb39 coding NC_007134.7 CM002907.2 36660750 ~ 36670369 (-)