AMCG00008834 (cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179)


Basic Information

Item Value
gene id AMCG00008834
gene name cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12966348 ~ 12969537 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008834
GAGACTTAATCGAATCCAGATTCAAGCTTAAATCATTGCTTTTTctgtatatgtaattataattgGTAACAGTAATCAGTTTTAGCTGAGGTGTTCAGCCAAAGAGACTGGTCGATTAAATAAGACGTGAGTTACAGTTACTGGActgtcactgactggactggactctcCTGTACTGCTGCTCTGAATGTATGTGCCctcctctcattctctctgtttctctgtcccGGCAGGGTGTCAGTGGCTGTCTCTCTGTCCTCAGGAATGCAGTGTTGACTGAGTTCCTGTCTAGCTGGATTTGAGGTCAGATTCCtcgccccctcctcctcccggGAGAATTCTTTCAGAGTCCTGTAgctggagagagtgagagaATGGCTCATGAGGGTGTGGTGCAGTACGAGCCGGTGGCGGAGATCGGGGGCGGGGCGTACGGGACGGTGTACAAGGCACGCGACCGGCAGAGTGGTCAGTTCGTGGCCCTGAAGAGCGTGCGAGTGCAGACAGACCAGGATGGACTCCCGCTGTCCACCGTCAGGGAGGTGGCCCTGCTCAAGCGGCTGGAGCAGTTCGACCACCCCAACATCGTCAAGCTGATGGATGTGTGCGCCACGCTGCGGACGGACCAGGAGACAAAGGTGACGCTGGTGTTTGAGCACGTGGACCAGGACCTCAAGACCTACCTGGACAAGGCCCCCCCACCCGGCCTTCCTGCTGACCACATCCAGGACCTGATGAAGCAGCTGCTGTGTGGGCTGGCCTTCCTGCACTCGAACCGTGTGCTGCACCGCGACCTGAAGCCCGAGAACATCCTGGTGACGAGCCGCGGGCAGGTGAAGCTCGCGGACTTCGGCCTGGCGCGCATCTATAGCTGCCACATGGCACTCACACCCGTGGTGGTGACGCTGTGGTATCGTGCCCCTGAGGTGCTGCTGCACTGCTCCTACGCCACGCCCGTTGACATCTGGAGCTCCGGCTGCATCTTCGCCGAGATGTTCCGCCGCAAGCCATTGTTTGATGGCAACTCTGAGGTGGACCAGCTGGGGAAGATATTTGATGTGATTGGCTTGCCGCCGGAGGAGATGTGGCCCACAGATGTGACACTGAAACGCCAGGCCTTCAAGCCCCGCCCCCCCAAGCCCATCAACAATTGCGTGCCCGAGATCAGCCAGGAGGGGGCGAACCTGCTGCTGGTGAGGAGGGCGAAGGGCCACAACGTAGCGTTGTCTGTCTAG

Function

symbol description
cdk4 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in oocyte stage I and ovary. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); familial melanoma; glioblastoma; obesity; and type 2 diabetes mellitus. Orthologous to human CDK4 (cyclin dependent kinase 4).

NR:

description
PREDICTED: cyclin-dependent kinase 4-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02089 CDK4; cyclin-dependent kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008834 True 1235 mRNA 0.58 7 12966348 12969537

Neighbor

gene id symbol gene type direction distance location
AMCG00008833 NA coding downstream 24112 12926593 ~ 12942236 (-)
AMCG00008832 zbtb39,LOC102796472,LOC106567078 coding downstream 48552 12913536 ~ 12917796 (-)
AMCG00008826 spryd3 coding downstream 81680 12863623 ~ 12884668 (-)
AMCG00008827 NA coding downstream 110123 12847007 ~ 12856225 (-)
AMCG00008821 NA coding downstream 220386 12739173 ~ 12745962 (-)
AMCG00008839 NA coding upstream 61033 13030570 ~ 13046587 (-)
AMCG00008846 NA coding upstream 185960 13155497 ~ 13158303 (-)
AMCG00008843 NA coding upstream 204656 13174193 ~ 13180841 (-)
AMCG00008850 NA coding upstream 215902 13185439 ~ 13203264 (-)
AMCG00008848 zc3h10,LOC108412311 coding upstream 237352 13206889 ~ 13208547 (-)
G51851 NA non-coding downstream 41692 12923204 ~ 12924656 (-)
G51811 NA non-coding downstream 45557 12920545 ~ 12920791 (-)
G51809 NA non-coding downstream 58015 12907321 ~ 12908333 (-)
G51724 NA non-coding downstream 306231 12657226 ~ 12660117 (-)
G51707 NA non-coding downstream 416731 12547400 ~ 12549617 (-)
G51875 NA non-coding upstream 52487 13022024 ~ 13023104 (-)
G51946 NA non-coding upstream 199893 13169430 ~ 13213278 (-)
G51950 NA non-coding upstream 240014 13209551 ~ 13211199 (-)
G51947 NA non-coding upstream 244735 13214272 ~ 13215995 (-)
G51948 NA non-coding upstream 284316 13253853 ~ 13257619 (-)
G51799 NA other downstream 69214 12895335 ~ 12897134 (-)
G51797 NA other downstream 74751 12890811 ~ 12891597 (-)
AMCG00008815 NA other downstream 361088 12601291 ~ 12605260 (-)
AMCG00008777 dctn2,LOC102785932 other downstream 1639989 11235642 ~ 11326359 (-)
G51250 NA other downstream 2167194 10797632 ~ 10799154 (-)
G51867 NA other upstream 31289 13000826 ~ 13001888 (-)
AMCG00008845 NA other upstream 121000 13090537 ~ 13097934 (-)
AMCG00008844 NA other upstream 166195 13135732 ~ 13184356 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other upstream 288161 13257698 ~ 13261822 (-)
G51974 rps26 other upstream 337885 13307422 ~ 13309425 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01076770_00000174_00000391 CDK4.L, CDK6.L, CDK4 coding CI01076770 null 174 ~ 391 (+)