AMCG00008836


Basic Information

Item Value
gene id AMCG00008836
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12997098 ~ 13002084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008836
CTACTTCCATTATAGATCTATGGTTCCGACCGTGTTGCGCCTGGTGATGATGTCATACGGCAGCGACACAACAGATTCCCTGGACCAGCGTGGAGTCAGAGAAGAGCCGGAGAGGCCGTTGCTTGCTGTTTGAGCGGCAGAAAGCATTGTCGTGACCCGGTGGTGCTGTTCGGTTTTCGGTTGTAATGTCGGCGGAGTCCCAAAGCAGCGCGAAGATGAGCGCGTCGCTGCCCCAGAAGCGTTACTACCGGCAGCGAGCCCACAGTAACCCCATGGCAGACCACACTTTCGACTATCCAGTGTGTCCAGAGAAGATGGACTGGTCAGAGCTGTACCCAGAATTCTTCAGGCCGCCAGCGGCAGGCGATTGCCATGATGACCCAGCGGACAAGGCGGAGGGGCGGGAAGATGCAGGGTACCGGGTGGAGTTCGCTGACATCGGCTGTGGATACGGGGGCCTTCTGGTGGAGCTGTCCACACTGTTCCCCAGGAAGCTGATGCTGGGCCTGGAGATCAGGGTAAAGGTGTCCGATTACGTGCGGGACCGTATCGCCGGGCTGCGGGCCGCCCACCCCGGTCAGTACCAAAACATCGCCTGTTTGCGCAGCAACGCCATGAAGTACCTGCCCAACTTCTTCACCAAGGGACaggtgtgtctTAAGATGTTCTTTCTGTTTCCGGACCCCCACTTCAAGAAAACCAAGCACAAGTGGAGGATCATCAGCCCCACCCTGCTGGCAGAGTATGCCTACACACTGAGAGAGGGGGCTGATGATATCATCATCCCTCGCCTGGGCACGTGTACAGAGGAGGGCAAGAAAGTGCAGAGAAATGGGGGCAAGAACTACCTGGCTGTCTTCCGCAGGGTGAAGGACAAACTGCGGAAAGACTGACCTGCGGACAAACACACTGACTTGGACACATTGATATAAACTCAAAAACTCTGAATCTAGAACCACACCACAATCTAGAAGCCTCAGCCTGGATGCTGCAGTCACTCTAGAACCATGAACTCTCCCAGCTGTGTGTTTAAACCCTGCCTGTGTACTGTCCTCACACACAGCCATGTTTGGTATAATGcgtttttttttaccttttaaatttaaatttcacACTGTTGGCTGCAATAGGAATAGAAGTTGCTGCCTTTCTCTCCCCCAGGATAAATTGGGTGATCCCTGTAGTGAGCCAGGCCCTCTATCCACAGAGACGGGACTTTTCTATTTCATAATATTGGAGGGGATATCCAAACCCTACtgttgccaaaaaaaacaaaagcaattattaATCTGTGTAATAGACACATGTTATGtcattgtaaataattatattaaaagaaatCCTGTAGTCCTTGTTCCTGTCAGTCTTAATTCTCCACATGGTTTCTTTTGTTCCCTGGCTTCGCTACTTTTCTTGTACAGCAATCTTGTCAAGCCTGCAGTGATCCTATTGTACCTCATGGGACTGGATTTagaatttaaatttgaaatgtcaGGAGGCAAGAAAATCAAACCATTCCAATAAAAATCTGTACTTGGCCACAGCACCCCTCCCCCCCGTATTGGGCCCTGCATCTTTGGGTCTCTGATgcttgacctttgacccttcACCCCTTTGTGTCCAAGCCTGTGGTAACTATTTCTCCCTCACTGTGGTTTGTGTCTGTTCCGTGTTGCTCTGAGCTGTTCCTG

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03439 trmB, METTL1, TRM8; tRNA (guanine-N7-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008836 True 1691 mRNA 0.50 5 12997098 13002084

Neighbor

gene id symbol gene type direction distance location
AMCG00008831 NA coding upstream 34115 12958757 ~ 12962983 (+)
AMCG00008829 NA coding upstream 84362 12909685 ~ 12912736 (+)
AMCG00008830 pip4k2c,LOC103385206 coding upstream 89217 12899895 ~ 12907881 (+)
AMCG00008828 NA coding upstream 101486 12891002 ~ 12895612 (+)
AMCG00008824 NA coding upstream 156898 12820798 ~ 12840200 (+)
AMCG00008838 NA coding downstream 3518 13005602 ~ 13014133 (+)
AMCG00008835 NA coding downstream 61411 13063495 ~ 13065081 (+)
AMCG00008840 NA coding downstream 71996 13074080 ~ 13097915 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding downstream 103442 13105526 ~ 13117044 (+)
AMCG00008842 NA coding downstream 121147 13123231 ~ 13132675 (+)
G51828 NA non-coding upstream 16323 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 69253 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 99991 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 251332 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 274118 12721082 ~ 12722980 (+)
G51904 NA non-coding downstream 138479 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 307532 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 309245 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 311506 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 474666 13476750 ~ 13476978 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 4373 12980804 ~ 12992725 (+)
G51812 NA other upstream 70304 12925238 ~ 12926794 (+)
G51756 NA other upstream 150865 12842715 ~ 12846233 (+)
G51734 NA other upstream 280312 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 447480 12539598 ~ 12549618 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 220236 13222320 ~ 13224946 (+)
G51939 NA other downstream 251730 13253814 ~ 13257640 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 304411 13306495 ~ 13309430 (+)
G52349 NA other downstream 1479837 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1525734 14527818 ~ 14542248 (+)

Expression


Co-expression Network