AMCG00008838


Basic Information

Item Value
gene id AMCG00008838
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13005602 ~ 13014133 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008838
GGAAGACCCAAAAGTGTCGCATCCTCTCCGGTCCTTTGGCCTCACAAGGAAAGATGCTGCAAGCTCTGAAAGTCAGCGCCCCGGTTCTGCGGTGGCTGGAGAGATGGGGGGAGAGCGGAGCCTTGCGGGCGACCAAGGGGGCAGCTGTGAAGACCCTGGCGGAGATGCCCGGACCCTCCGCCCTCGGGTTCGCTTGGGACCTCTTCGCCCGGGGGGGTCTGTCCCGCTTGCATGAACTACAGGCGGAGGGCCTGTCCCGGTATGGCCCGGTGTGGAAGGCGAGTTTTGGGCCAATCCTGACGGTGCATGTGGCTGAGCCGGCGCTGATCGAGGAGGTTCTGAGGCAAGAGGGCCAGCACCCAATCCGCTCAGACCTCTCCTCCTGGAAGGACTACCGGCAACAGCGCGGACACTCCTACGGCCTACTGACCTCggagggggaggagtgGCAGAGAGTGCGCAGTCTCCTGGGCAAGCAGATGCTGTGCCCACGGGCAGTAGGGGCGCTGGGCGAGGGGCTGAACGCCGTGGTCACTGACCTCCTGACCCGCCTGCAGCTGCGCCGCCGCCGCCACCCTGCCGGCCTCGTCACCGATGTCACACAGGAATTCTACCGCTATGGCCTGGAAGAGACGGAACGCTTCGTGGCGTCGCTGGGCAGCATGTTCTCTCTTACCCTACTCACCATGGCGATGCCCCACTGGCTACACCGCCTGCTGCCCCAGCCCTGGCAGCGCTTCTGCGCCAGTTGGGATTACATGTTCCAGTTCGCGCAGGGGCACATCGACAAGCGTCTGTCAGAGGAGGCGGAGCGCGTGGCGCGGGGGGAGGGCCGGGGGGGGCAGTACCTGGCCTCCTTCCTGTCCCAGCAGGGCCTGTCCATGAAGGATGTGTACGGCAACGTGACTGAGCTGCTACTGGCCGGGGTGGATACGatctcCAGTTCCCTGTCATGGAGTCTGTACGAGCTGTCCCGGGCCCCCGAGCTGCAGAGCTTAGTGAGGGAGGAGGTGGAGGCAGTGATGGGGGGGCGTGCAGTGCCAGAGTCCACAGACATTGCACAAATGCCGCTGCTGAAGGCTGTGGTCAAGGAGGTGCTAAGACTGTATCCTGTGATTCCTGCCAATGCCCGACCGGACCAGTTCTGTCCACAGCGCTGGCTGGACCGGACACACAGCCCGAATCCCTTTGCCACGCTGCCCTTCGGCGTGGGCAAGAGGAGCTGCATCGGCCGACGCATCGCCCTGCTGGAGCTGCACCTCGCCCTGGCACGGATCCTGACCCACTTCGAGGTCCGGCCTGACCCAGCGGGAGGAGAGGTCCGACCCATGACCAGAACCCTGCTGGTACCAGCATCTCCAATCAACCTGCAGCTCAATGAGCGCTGACGGTGCTGCCGGCCCAGAGAGCTCACCCCGACATCCCTCCTCCAGGAGGACTGAAGAATCCTGGGCCTGGGAGCTGGGCATAACTTGAGCCCCAAGCTGCGGAGGCCCAGGGTCTGAAAAGTGAGCAGTGCCGCAGTGCAGGGGAACCGGCGCCTTTTGCCAAATAGACAGCGGAGGGGCAGCTGTGTGGGGTGGCTTGAGTGTCAGCCCAACACAGACAGGACAGGTTCCACCACAGCTGGCATAGCCGGGTCCTGCAGGGCTTCAGCCTCTCGTGGGTTCCATTAATGCCAAACCCGTTAACTGATTCGATTAGCGGGGTGTAATTTGTCCCAGTTCCAGCTTACCCAGGGACTGGAGACTTGCAGAGAGAGCTGTGCTGCCTGCAGgactgtctctttctctctctcctggatcaGGGTCACCCACTAACTGCTCTAGTACAGCACGTGTATGCAAATCTGTTCGCCCCCCATTGTCTAGTTACCAAGTGTAATCAGATGCCTATGGCATCACTCTAAGGCCTTTTACAGTTCAAAGCTACAGATCCTGCTTATTCAATTAACATATTCAAGTATCACCGGCAGCCTGGAGACAATTCATTAAATCACCCCAACAATGGCAGATCAGACCAATTAAGTTACTAGGAGCAGCTGGGAGAGCAAGAACAACGGTGAGAGGAAACTGCCCTTGTTTGCCGctcttaattcattaattagaTAACTCCTCAAATACAGAACCTCCCCATCCCTTACCCAGTGTTTGAAACTTActcttttctatattttgtctttattgatGCGACGCATCAGAAGTTTATTTGTTCGGTTGTGTCAGTCCCCCATGCTGTGACACCGTTCTTTGCAAAAGTTTTatttatggatgtatttattgattaatttatgcatttatttattttcatactgcCAGAGGCAACAATTAAAGGGTCACACTGGCATTTAATTACGCCACAACTGTGACGGACAGGACACAATTCAGCCACAATCAgtgaacactgtgtatccacACTGTAGCAGTTGTTTTACTCGTGTATCAGCCTTTCTTAAAAGTCCACAAATACTGTGACTGGTGCTTCTATGACTGTTACTGtgtcatctgtgtttttgttttcctgtgcctttatttaatttcataattattcAATAAAAGGGTCATACATACA

Function

GO: NA

KEGG:

id description
K07438 CYP27B1; calcidiol 1-monooxygenase (25-hydroxyvitamin D3 1alpha-hydroxylase)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008838 True 2571 mRNA 0.56 9 13005602 13014133

Neighbor

gene id symbol gene type direction distance location
AMCG00008836 NA coding upstream 3518 12997098 ~ 13002084 (+)
AMCG00008831 NA coding upstream 42619 12958757 ~ 12962983 (+)
AMCG00008829 NA coding upstream 92866 12909685 ~ 12912736 (+)
AMCG00008830 pip4k2c,LOC103385206 coding upstream 97721 12899895 ~ 12907881 (+)
AMCG00008828 NA coding upstream 109990 12891002 ~ 12895612 (+)
AMCG00008835 NA coding downstream 49362 13063495 ~ 13065081 (+)
AMCG00008840 NA coding downstream 59947 13074080 ~ 13097915 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding downstream 91393 13105526 ~ 13117044 (+)
AMCG00008842 NA coding downstream 109098 13123231 ~ 13132675 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding downstream 267141 13281274 ~ 13288925 (+)
G51828 NA non-coding upstream 24827 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 77757 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 108495 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 259836 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 282622 12721082 ~ 12722980 (+)
G51904 NA non-coding downstream 126430 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 295483 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 297196 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 299457 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 462617 13476750 ~ 13476978 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 12877 12980804 ~ 12992725 (+)
G51812 NA other upstream 78808 12925238 ~ 12926794 (+)
G51756 NA other upstream 159369 12842715 ~ 12846233 (+)
G51734 NA other upstream 288816 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 455984 12539598 ~ 12549618 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 208187 13222320 ~ 13224946 (+)
G51939 NA other downstream 239681 13253814 ~ 13257640 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 292362 13306495 ~ 13309430 (+)
G52349 NA other downstream 1467788 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1513685 14527818 ~ 14542248 (+)

Expression


Co-expression Network