AMCG00008842


Basic Information

Item Value
gene id AMCG00008842
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13123231 ~ 13132675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008842
ATGAACCCCCTGGGAATTTGCATTCCAGAGTCAGCGGTGTTGAAACTCTGCACACTGCGAGTGGCAGGGGGCAGGAAGAAGCTCCCCCTGCCAATTACACTTGGGAGCAAACTGATCAGTCACAAGCAGACGGCCTGTGACTCTGGCATCCCGGAGAcccttcagccctgcccctcgGTCGGTCAGCTCATCTGCACTCCTaaaatgGAGCTTGTGTTACTGCCAGAGAAGGCCTATGGAAACTTCTTTGAGGGAGACTGCTACCTCCTGCTGTCTACGCGGAAGTGTGGCAAATCTGTGTCCTATGATGCTCATTACTGGATCGGGGCGGAGTCATCTCAGGACGAGCAGGGGGCAGCGGCCATCTACATCACCCAGCTGGACACTCACCTGGGCGGACGGCCAATCCAGCACCGCGAAGTCCAGGGCTACGAGTCCGACACCTTCAGGGCCTACTTCAAACAGGGAATCATGTGGGGGATGGCTCTCTGTAAGGACATCCGGGACCGCGAGCGGGGGGGGCGGGCAGAGGTGGGCGTGGTGGACAGTGAAAAGGAGGGGGATGCCCCAGAGCTGATGGCAATCCTGGAGGGGGTGCTGGGGAAGCGAGAGGGTCAGCTAGTCAACGGGACGCCCGACGAGGAAGCCGACCTGGAGCAGAAAAGCTGCATCACTCTGTACCATGTGGAGGCGATGAGCGACGGCGCTGAGTCGGCCCTGTTCACACAGCTGTTCCCCAGCTGGTCCAGCCGGGACCAGAGCCAGGGCATGGGCCGTGTCTACAATGTGGGCAAAGTTGCCAAAGTATCCCAGGATAAGTTTGACGCATCTCTGATGCACTCCCAGCCTGACGTGGCTGCTCAGGAGCGCATGGTGGATGATGGCACTGGGGAGGTGCAGGTGTGGCGGATCGAAAACTTGGAACTGGTCCTTGTGGACAGGAAGTGGCATGGCTTCTTCTATGGCGGAGACTGCTACCTCATCCTGTACAGCTACGAGGTGAACCGCAGGAAGAACTACCTGCTGTACATATGGCAGGGTCGACATTCCTCCCAGGACGAGATCACAGCCTCTGCGTTCCAGGCGGTCAGTCTGGACCAGAAGTACGGTGGTCAGCCGGTCCAGGTCAGGGTCACCATGGGCAAGGAGCCACGGCACTTCATGGCTATGTTCAAGGGCAGGGTGGTCATCTTCGAGGGCGGTACCTCTCGGGTGGGGAACACAGACCCTGAGCCGCCGGTCCGGCTGTTCCAGGTGCGCGGTACCGACCCGTGCAACACAAAGGCTGTGGAGCAGGAAGTCCCGGATCACCAGGCCCGCCTCTTCGAGTGCTCCAACAAGACGGGCCGCTTCATCGTTATTGAGGTGACACTGTTCACCCAGGACGACCTCACCGAGAGTGACGTCATGCTGCTGGACACCTGGGACCAGGTGTTCCTGTGGCTGGGCTCAGGGTCCAGtgagatagagagggaggagTCAATTAACACCTGTCGGGAGTACCTGTATACTCACCCTGGGGGTCGCGACCCCGACACGCCCATTCTGCTGGACCTGAATGGCACTGCAGAGGAGACCCCCCGGGTGCTGGAGACCCACCCCCGCGACAGCCTGCTGTACAAGCAGACCGAAGAGCTGCCCAAGGGAGTGGACCCATCGCAGAAGGAGagacACCTGTCGGACGAGGATTTCCAGGCGGTGCTGGGGGTCAGTAAGGATGAGTTCTACACTCTGCCGCAGTGGAAACAGCTCAGCATGAAGAAGAAGACAGGGCTGTTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008842 True 1782 mRNA 0.60 14 13123231 13132675

Neighbor

gene id symbol gene type direction distance location
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 6187 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 25316 13074080 ~ 13097915 (+)
AMCG00008835 NA coding upstream 58150 13063495 ~ 13065081 (+)
AMCG00008838 NA coding upstream 109098 13005602 ~ 13014133 (+)
AMCG00008836 NA coding upstream 121147 12997098 ~ 13002084 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding downstream 148599 13281274 ~ 13288925 (+)
AMCG00008858 NA coding downstream 166631 13299306 ~ 13302628 (+)
AMCG00008857 LOC102783756 coding downstream 201090 13333765 ~ 13347362 (+)
AMCG00008855 NA coding downstream 222730 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 235923 13368598 ~ 13377702 (+)
G51828 NA non-coding upstream 142456 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 195386 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 226124 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 377465 12739197 ~ 12745766 (+)
G51735 NA non-coding upstream 400251 12721082 ~ 12722980 (+)
G51904 NA non-coding downstream 7888 13140563 ~ 13187139 (+)
G51968 NA non-coding downstream 176941 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 178654 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 180915 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 344075 13476750 ~ 13476978 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 130506 12980804 ~ 12992725 (+)
G51812 NA other upstream 196437 12925238 ~ 12926794 (+)
G51756 NA other upstream 276998 12842715 ~ 12846233 (+)
G51734 NA other upstream 406445 12715494 ~ 12716786 (+)
AMCG00008810 NA other upstream 573613 12539598 ~ 12549618 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other downstream 89645 13222320 ~ 13224946 (+)
G51939 NA other downstream 121139 13253814 ~ 13257640 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 173820 13306495 ~ 13309430 (+)
G52349 NA other downstream 1349246 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1395143 14527818 ~ 14542248 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location