AMCG00008844


Basic Information

Item Value
gene id AMCG00008844
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13135732 ~ 13184356 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008844
ATGTTCAAAGTAAAAGTTTCGGTGGAGACAGACCTCAGGACTCTGAGCCCAGAAGCTGCGGAGTTCTTCTGGATCAAGTACAGGTGGTGGTGCAGCCCCACTGGTACACTCAGCATGACAGGCACAGCTGAAGAAATGGACAGTTTCCTCCAAGATGTCTACCAGTTTCAACCTGAATCCAGGAGGCTCCTGGCTGGCTTGGGAGGGGCTGGTGGGACAATCACTGTGCCTGCCGTGCAGTATGACCACCTCAGCAAGTCCTACAAGAGGGAGCTCGAACAGATCAAAAGTGACAACAGGGTGGAGATGGAAGCCGTGGTCTCTGTGTCTTTCAAGCCTGGGAAAGAGGGCCAGGCCATGGTGGAGAGAGCCCAGAATGACTTTATCAGGCTGGTCCACAAAATTGCTCCCAAACTCGGAGGCATCCAGATCCCAGATGCTAGCCTGAGAGACTCCACTGGGACCCTGTCCTGCACCCTGCTGAACCCCAAACAGACGGAGAGGGTGAAGGCGGTGTTTGGACAGATCCGTGAGAGACACCCCAACATAGCGACTGGAGAGAAGTACAGGGACTGGAAGCTGATTGGCCTGCCGGAGCACCTTGGCCCCGCGGTGAGGGATGTGGAGCAGAAACTGGGCGGACCAGCCTTCAAGGAAGGGGTGAGACTGAGGAGAAGGTTGGGGGGGTGCTCACTGGAGCCCCCggggcagcaggaggaggagcaggaggcgGACAAGCACCCCAAGCCAGGCAGACGTTTCATTGGAACCTCGAGGACGGCCTACCTGCCTGACAGCCCCGAGGGCAACGAGGTGCTGGGGCTGCTCCAGAAAGCCTTCGACCAGAATCTGATCTTCACTGTGGGCACCTCCAGGACCATCGGGTCCGAGGACACTGTCACCTGGAACGACATCCATCACAAAACTAATATGCACGGTGGACCTCAGAGGTTCGGCTATCCTGACCCTGACTACCTGAAGAGGGTGAAGGAGGAGCTGAAAGCCAAAGGgataaagtga
>TU64988
TCTGTCTTGAGCTGGCAGGGGTGCTGTAGCTGATGAGAAGCTACTGGAAGCAGAATGCTCTCCCAGCCTTCCTCTCCCCCCCAGCTCTGGCTGACCCCATGTCCTGTGTGACTCTGATTACAGGACAAGCACCCCAAGCCAGGCAGACGTTTCATTGGAACCTCGAGGACGGCCTACCTGCCTGACAGCCCCGAGGGCAACGAGGTGCTGGGGCTGCTCCAGAAAGCCTTCGACCAGAATCTGATCTTCACTGTGGGCACCTCCAGGACCATCGGGTCCGAGGACACTGTCACCTGGAACGACATCCATCACAAAACTAATATGCACGGTGGACCTCAGAGGTTCGGCTATCCTGACCCTGACTACCTGAAGAGGGTGAAGGAGGAGCTGAAAGCCAAAGGgataaagtgaagaaaaagagacagagtGG
>TU64989
ATTTCAGAGGCCAGTTCAAGGCACACTTCTCCCAGCAGATGCCTGACGCCATGCCCCTGCCACTGAGGACGGCCCTCAGTGGTCCCTAGTGCCCTGGGCTGGCATTCAAAAGAGGGGAGGGACTGTGGAGAGTTGGGGGTGGTGCTGGTTTTAGCTGTCAGcccaggagcaggagcaggactGGGAGGTGAGCAGGGCACGGAGGGGGAGAGTTCTGTGATGAGTGCCTGGAGTCGGCGGTGCACATCATTAGCGCAGTGTGCCATGTCTGCCAGGACGTGTTTGGGAAGGTGTAACCAGCCCCCTAGAAGGATGAGGTATATCAGATCACCTACCAGCCTCCCCAGATTCCCCCACTGTGGCTTGATCCTTCAGGATCGACTACGAGATTCCCAGTGGGATACAggcagtgagagtgtgtgtcagtgtttcttGAAGCAGTGTGTTTGCTGacatgcattttgtgtgtgtgtgtgtgaccatgTTTTTGTTGCACTGTATAAGACACACTTATATTCCCGCTGATTAAGAATGAATCACTGTCAATTACAACCccagtgtgagtgagtgtgagtgttgGTGGTGGgggtatattacattttaaggattcttttaaatgtataattagctacaactattattattattattattattattattattattattattattattattattattaatactaatattaatctGTTGTCGTCTGACATTTTGTAATGTGCTAACTTACCAGAAAAGGGCACTCtgccattatatatatatatttacatgtatgtgtCTCTCTTATACTGAATTGTATTTTCCCATTACCCTGCTCCTCTGCCCCACCCTGCTGACCAGTGTATTAATGGGGAAGGCCACTACAGCCGCACTGACAGTAGAGTCGGTTATGCTCTGTAGCAGCAGGGAAGACAGTGTTAATGTCACGGTGTTCGAGTCCAGTAGGATTCCAGTTTGTGTTTCCTGAAGTTGGGTTTAAGGGTTAGCGGGCGATGTTGATAttttatgttgtatgttttcctgATTGTAGTAATACTATATCCGGGTGACAGGGTGTCTTTAAGAGAAGAATTACTGGAAGCATTAAGGAGTTTACTACTGTGAGACTGAGAGCTAAAGctgtaattttgtattgaatagAAGTAACTAAAAAGAAGTATATCTCTGGTTCATAATTCATGACACTAATGAATGTAGGCATGTACAATCACTCTGTATCGAACCCCCcacctgtactgcagctgccaATAAACACTGTCTCTCTGCACCGCACTGCCCTGTCTCTGTGGTCGCTCATTTCTTGTCTGTGGGTCTGAGCACAACCACAGCCCCTACTGACACAGGGAGAGGCGAGATGCACTGTCCTCCCACTGCCTG
>TU64990
ATTTCAGAGGCCAGTTCAAGGCACACTTCTCCCAGCAGATGCCTGACGCCATGCCCCTGCCACTGAGGACGGCCCTCAGTGGTCCCTAGTGCCCTGGGCTGGCATTCAAAAGAGGGGAGGGACTGTGGAGAGTTGGGGGTGGTGCTGGTTTTAGCTGTCAGcccaggagcaggagcaggactGGGAGGTGAGCAGGGCACGGAGGGGGAGAGTTCTGTGATGAGTGCCTGGAGTCGGCGGTGCACATCATTAGCGCAGTGTGCCATGTCTGCCAGGACGTGTTTGGGAAGGTGTAACCAGCCCCCTAGAAGGATGAGGTATATCAGATCACCTACCAGCCTCCCCAGATTCCCCCACTGTGGCTTGATCCTTCAGGATCGACTACGAGATTCCCAGTGGGATACAggcaGACAAGCACCCCAAGCCAGGCAGACGTTTCATTGGAACCTCGAGGACGGCCTACCTGCCTGACAGCCCCGAGGGCAACGAGGTGCTGGGGCTGCTCCAGAAAGCCTTCGACCAGAATCTGATCTTCACTGTGGGCACCTCCAGGACCATCGGGTCCGAGGACACTGTCACCTGGAACGACATCCATCACAAAACTAATATGCACGGTGGACCTCAGAGGTTCGGCTATCCTGACCCTGACTACCTGAAGAGGGTGAAGGAGGAGCTGAAAGCCAAAGGgataaagtgaagaaaaagagacagagtGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008844 False 1020 mRNA 0.57 3 13135751 13138152
TU64988 False 430 lncRNA 0.56 2 13135732 13136309
TU64989 True 1389 lncRNA 0.46 2 13181915 13184356
TU64990 False 716 lncRNA 0.57 3 13135732 13184356

Neighbor

gene id symbol gene type direction distance location
AMCG00008839 NA coding downstream 89145 13030570 ~ 13046587 (-)
AMCG00008834 cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179 coding downstream 166195 12966348 ~ 12969537 (-)
AMCG00008833 NA coding downstream 193496 12926593 ~ 12942236 (-)
AMCG00008832 zbtb39,LOC102796472,LOC106567078 coding downstream 217936 12913536 ~ 12917796 (-)
AMCG00008826 spryd3 coding downstream 251064 12863623 ~ 12884668 (-)
AMCG00008850 NA coding upstream 1083 13185439 ~ 13203264 (-)
AMCG00008848 zc3h10,LOC108412311 coding upstream 22533 13206889 ~ 13208547 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding upstream 35568 13219924 ~ 13224794 (-)
AMCG00008851 NA coding upstream 43265 13227621 ~ 13246570 (-)
AMCG00008849 NA coding upstream 84178 13268534 ~ 13273981 (-)
G51875 NA non-coding downstream 112628 13022024 ~ 13023104 (-)
G51851 NA non-coding downstream 211076 12923204 ~ 12924656 (-)
G51811 NA non-coding downstream 214941 12920545 ~ 12920791 (-)
G51809 NA non-coding downstream 227399 12907321 ~ 12908333 (-)
G51724 NA non-coding downstream 475615 12657226 ~ 12660117 (-)
G51950 NA non-coding upstream 25195 13209551 ~ 13211199 (-)
G51947 NA non-coding upstream 29916 13214272 ~ 13215995 (-)
G51948 NA non-coding upstream 69497 13253853 ~ 13257619 (-)
G51965 NA non-coding upstream 114982 13299338 ~ 13300283 (-)
G52019 NA non-coding upstream 189027 13373383 ~ 13455852 (-)
AMCG00008845 NA other downstream 37798 13090537 ~ 13097934 (-)
G51867 NA other downstream 133844 13000826 ~ 13001888 (-)
G51799 NA other downstream 238598 12895335 ~ 12897134 (-)
G51797 NA other downstream 244135 12890811 ~ 12891597 (-)
AMCG00008815 NA other downstream 530472 12601291 ~ 12605260 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other upstream 73342 13257698 ~ 13261822 (-)
G51974 rps26 other upstream 123066 13307422 ~ 13309425 (-)
AMCG00008860 NA other upstream 132511 13316867 ~ 13325227 (-)
G52099 NA other upstream 500979 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 754095 13938451 ~ 13983893 (-)

Expression


Co-expression Network