AMCG00008847 (wnt1,LOC106567052,LOC106572674)


Basic Information

Item Value
gene id AMCG00008847
gene name wnt1,LOC106567052,LOC106572674
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13281274 ~ 13288925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008847
ATGCGAGTGCTGGCCCTGCTTGCGGGGGTGAGGGCGCTGTGCGCGCTGCTGCTCGGCTCGCTCTCCGGCACGGCGGCGGTCAACAACAGCGGGCGCTGGTGGGGGATAGTGAACGTGGCATCTTCAGCCAACCTGCTGACAGACTCCCAGAATGCCCAGCTGGTCCTGGACCCCAGCCTACAGCTGCTGAGCCGCCGTCAGCGCCGCCTGATCCGGGTGAACCCTGGCGTCCTGCATGCCATCGCGGGGGGGCTGCACACCGCCATCAAGGAGTGCAAGTGGCAGTTCCGCAACCGGCGCTGGAACTGCCCCACCACCGCGCACAGCCCCGGCGTCTTCGGCAAGATCACTGCAGTGGAGCCGTGCCGGATAAGCACTAACATGCACCCTCCattctctccctgcctccctcttcCTTGCCACTGTTGCCGGGAGACGGCATTTGTGTTTgcagtgacgagcgcaggggtgACGCATGCAGTGGCACGGTCCTGCTCCGAGGGCTCCATTGAATCCTGCACTTGTGACTATCGGCGGCGGGGCCCTGGTGGCCCTGACTGGCATTGGGGGGGCTGCAGCGATAACATCGACTTTGGGCGAGTGTTCGGGCGCGAGTTTGTAGACTCCAGTGAGAGGGGGCGCGACCTCCGCTACCTCATCAACCTGCACAACAACGAGGCCGGACGCATGACAGTGTTCTCGGAGATGCGTCAGGAGTGTAAGTGTCACGGCATGTCTGGCTCCTGCACTGTGCGCACCTGCTGGATGCGGCTGCCCAGCTTCCGCGCTGTAGGCGACTTCCTGAAGGACCGCTTCGACGGGGCATCCCGTGTCGTCTACGGCAACAAGGGCAGCAACCGGGCCTCACGCCGGGCTGATCCACGCCACCTGGAGCCAGAGAACCCTGCCCACAAGCCCCCCTCGACCCAGGACCTGGTCTACTTTGAGAAGTCACCCAACTTCTGTTCGTACAATGGCAAGACCGGCACCCCCGGGACCTCAGGTCGCACCTGCAACAGCTCCTCACCAGCACTGGACGGGTGCGAGCTGCTGTGCTGTGGCCGTGGCTACCGGACCAGAACTGAGCGGGTCACAGAGCGCTGCCACTGCACCTTCCACTGGTGCTGCCATGTCAGCTGTCTGAACTGCTCCAGCACACAGGTCCTGCACCAGTGTCTGTGA

Function

symbol description
wnt1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within brain development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; midbrain hindbrain boundary neural keel; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 15 and osteoporosis. Orthologous to human WNT1 (Wnt family member 1).

NR:

description
PREDICTED: proto-oncogene Wnt-1

GO:

id name namespace
GO:0035284 brain segmentation biological_process
GO:0021587 cerebellum morphogenesis biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03209 WNT1; wingless-type MMTV integration site family, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008847 True 1182 mRNA 0.64 5 13281274 13288925

Neighbor

gene id symbol gene type direction distance location
AMCG00008842 NA coding upstream 148599 13123231 ~ 13132675 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 164230 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 183359 13074080 ~ 13097915 (+)
AMCG00008835 NA coding upstream 216193 13063495 ~ 13065081 (+)
AMCG00008838 NA coding upstream 267141 13005602 ~ 13014133 (+)
AMCG00008858 NA coding downstream 10381 13299306 ~ 13302628 (+)
AMCG00008857 LOC102783756 coding downstream 44840 13333765 ~ 13347362 (+)
AMCG00008855 NA coding downstream 66480 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 79673 13368598 ~ 13377702 (+)
AMCG00008862 kmt2d,LOC107563643 coding downstream 98482 13387407 ~ 13431241 (+)
G51904 NA non-coding upstream 94135 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 300499 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 353429 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 384167 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 535508 12739197 ~ 12745766 (+)
G51968 NA non-coding downstream 20691 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 22404 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 24665 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 187825 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 397914 13686839 ~ 13687780 (+)
G51939 NA other upstream 23634 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 56328 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 288549 12980804 ~ 12992725 (+)
G51812 NA other upstream 354480 12925238 ~ 12926794 (+)
G51756 NA other upstream 435041 12842715 ~ 12846233 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 17570 13306495 ~ 13309430 (+)
G52349 NA other downstream 1192996 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1238893 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1449524 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1494118 14783043 ~ 14795184 (+)

Expression


Co-expression Network