AMCG00008850


Basic Information

Item Value
gene id AMCG00008850
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13185439 ~ 13203264 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008850
tttttattttggtcgcgatgatctctctctctctctctctctctctctctctctctctctctctgatgcaCTGCAGTGCTGAAGGGTGTGTTCAGACGAGCTAGCACAAGTACAGTCACTGCGCTGCTTTACAACTTGCAGCTCCGTTTTCCtgcgttttttcttttttctgtaagGACCCAAACAGAGAGGCAGCACAACACATGTCAGAGGAACAGGAATATAAATAGTTCTTATTGTTTAACTgtaattcttgttttttgttgggTGCAGAAACGGTGCAAGTcggttgattttattttggacGTGACAGTCTGCTTTGACCGTGTATTGGAGCTACACCCCAGTCAACGTTTGGctgatcatttaatttaatgtaatgtacatattatatatgtattaatcacTTAACAGCGACTTATTATTTTTAGCACGCATTTTGAGCTGCCACaagttgattttctttttaatgttattattttcaccaACCTCCATGTGATTCTCCACTTACTGGACCGCAGCGTTAAAAGTACATCCAAGTCCAGTCGGTATCGGTAGCGATGCGGAACGCCGAGGGAGCGCCGGGGCCGACCGGGGGGGAAGCACCGAACCCGGAGGAGACCTACGGTGCCGACCCGGCTCTGGACCAGCCCCCGGGAGTCAATGCCGTCTCAGTGCTGTTGTCCTTCGGGAAGTGCCTGGGCGCCCTATTGCCAGTGTACTTGGCCGGGTACTTTGGGTTCAGCATCAGCCTGGTGGTGTTCGGGCTGATGGTGTACATGGGCTGGAAGTGCACCCGGGAGGGCAAGGAGACGCGCCTCAGGGCCGCCCTACACCAACtggagcaggagcaggaccTCACCGGCACCCGCATCTTCCGGAGCAAGAGAGACCTCCCGACTTGGgtgAATTTCCCTGACGTTGAGAAAGTGGAATGGCTGAACAAGGTGCTGCAGCAGGCCTGGCCCTTCCTGGGGCAGTACACGGAGAAGCTGCTGCTGGAAACTGTGGCCCCCTCCCTGCGCGCATCCAGCCCCCACCTGCAGACTCTGAGCTTCACTCGCATCAGCCTGGGGGACAAGGCTCTGAAGGTGGTAGGAGTGAAGGCCCACACTGAGATGGACAGAAGACAGGTGATGCTCGACCTGTACCTCAGctACGTGGGCGACGTGGAGATCAATGTGGAGATTAAGAAGTATTTCTGTAAGGCAGGAGTGAAGGGAATACAGttacATGGCATGCTGCGAGTGATCCTGGAGCCTCTGATTGGGGACGTGCCACTGGTGGGGGCTGTCACCATGTTCTTCATCCGCCGCCCTAGACTGGACATCAACTGGACCGGACTAACCAACCTGCTGGACATTCCTGGGCTAAATGTCATGTCGGACACCATGATCATGGACGCAATCTCCTCTTTCCTGGTTCTGCCCAACCGGCTCACAGTGCCCCTAATGGCTGACATGCACGTTGCACAGCTGCGCTCCCCACTGCCCAGGGGTATCGTGCGTATCCACCTGATTGAGGCCGATGCCCTGGCCCCCAAGGACACCTACATCAAAGGGGTGATGAAGGGGAAGTCTGACCCGTACGCCGTCCTGCGTGTCGGCACCCAGACGCACACCTCGCGCACCATCGACAACAACCTGAGCCCCCACTGGGGCGAGATGTACGAGGTGATTGTGCACGAGGTCCCAGGGCAGGAGCTGGAGCTTGAGGTGTTCGACAAAGACCCCGACCAGGACGACTTCATTGGCAGgATGAAGATGGACCTTGGGGCAGTGAAGAAGGCAGGAGTGCTGGATGAGtggttTACTCTGAAGGATGTCCAGTCTGGCCGTGTGCACCTGCGTCTGGAGTGGCTCTCCCTGCTGCCCAGTGCTGACCGTCTGGAGGAGgtgcttcagaaaaatcTCACAGTCTCCAGTAAGACCGCTGACCCCCCCTCGGCGGCCATCTTGGTGGTGTATCTGGACCGTGCGCAGGAGCTTCCTCTGAAGAAGGGAAATAAGGAGCCCAGCCCCATGGTGCAGCTGTCCGTGCAGGACACCACGCGGGAGAGCAAGacgtGTTACAGCTCCAGCAGCCCAGTGTGGGAGGAGGCTTTCAGCTTCTTCATCCAGGACCCCCGGAAACAGGACATCGACATCCAGgttAAGGATGATGACCGTGCGCTGACCCTGGGCAGCCTGTGTATCCCTCTGTCCCGCCTACTGATGGTCTCTGACCTCACCATGGACCAGTGGTTTCAGCTGGACAGCTCAGGGCCAGCCAGCCGCATCTACATCAAAGCCATACTGAGGattttgtggCTGAATGatgctgccccccccaccactcccGTCTCGCCCTCCCCCTCTGTGCTGGTGCCTGGGGAGGCTGGGGGCGATGAGGAGGAGGGTGTGAAGCCAGGGGTGTCCCCCGGGGGGGCTCAGAACCTGGTGGCCATGGACAACTTCATGATGGTCAAGGGCAAGAGTGACCCCTACGCCGTGATACGCACAGGGGGCGTGGCCTTCCGCAGCCGGGACCTGGACAAGGATGACTTCCTTGGCagGTTTAAAGTGAGCCTGAAGGACATCATCACCTCCCAGTACATCAACCAGTGGTACAGTCTAGCTGATGTGAAGTCCGGCCGTGTCCACCTTATCCTGGAGTGGCTGCCCAGAATGACCGAAACCGCCCGCCTGGACCAGGTGCTGCAGTACCAGTCCCAGGTGTCCTATGTGAACCAGGCAGTGCTGTCGTCCGCACTGCTGTTTGTGTGGGTGGAGCGCGCCCACAGCCTGCCGaTGAAGAAGAGTGGGAAGGAGCCTAAGGCAGGGGTGGAGCTAACGCTGAAAAACACTTCCCACAGGACCAAGgtgtgtgATCGGTCCAATGCCCCAGAGTGGGAGGAGGGTTTTTCCTTCCTGGTTCATGACCCCAGAGAGGAAATTCTGTTCGTGAAGatcTCCCACAGCTGGGGAATGCCACTGGGCTCGCTGGTTCTGCCCCTGCGGGAGGTGCTGACTGGGCCGGACCTGGTCCTGGACCGCTGGTTCAATCTGGATGGAGCCCAGTCTGACAGCCAGATACTGCTGAGAGTGGCGCTGAAGATCCTGGTTTCCCGGGAGACGGAGTGCGGCAGGGGGGAGGTCAGTGCCACCCCCCtcggagaggagggggagatgCAAGATCAGCCTGTCCCCACCCCGGAGCTCTCTGCAGCCAATCAGGATCTCCGACACAGAGGGGTGCCTGTGCAGGGggctGTTGACCATGACAACAGCTCAGTGGGGCAGGTGAAGCTGTCCCTGTCCTACTCCAGCGATGAGAACAGACTGGTCATTATCGTCTATGCCTGCAGgTACGATCTGAAAGAGGAGACGACCTAAATGACTGATAGTCACTATGACCCAGGCTCAGCCAGCGATGCCTTCAACCCTCCCCTCCACGCTCCCTCACTCCCACTCTGTGACACCAAgtgtttttacaatttaaacaattaatcttttaatttatcTGCTGTACTGTGAGATTTTGAGGGGGAAAAGAGGGGGGagagatattttttatttgatcacCAGCCAGGTAGATGCAGGGCAGATCCTTCCCTTGTAAACCCATCCTTGACTATGGCTGCAGAAAAGTCAAAATCCAATGAAATCAGTCTCTCAGAgacgcacacatacatacatacaaacatacaaacagacacacacacacacacacatacacagatagacagacagacacagatatGGATGGAGAGGGATAGGAAAGGAGAGAGgtagaggggaagagagagaaagagagggaggtaTGTAGGGAGCTGGGAATATAACAATCCCAGAGCTGGTATGGAGAATGGGTCCCCATCGCCGCCTTAAAGACACCACCCAGAGTGCTGTACACCGAAAACCAAAGTTATTTGAACTATTACATTGTTGCTGGTctatcattgtttttttaatatgtattttatgattcctattgttattgtcagtatttttctgttcttttcagCGGAGGTAAACaggagagtgtttgtgtgtttgtgtgcatgtctgtataTGCAGACGTGTCACGTGTGGCCTGATCAAAGCTGGAGTTCAGGAGTACAGGAGAGAAAGGGATGCTGGGAATATAGGAATGTGGGAATGAAGAAGGGGAATCCTGAATCTCGGTCTAATTTTTGTCACTCCtaaaaacacgcacacacataacTATTAGTacgtatacatgtatgtgtagaTATGGCTTCTGCCCAAACTAATTACTTTTGCATTGTGATCACGTCAGTTCAGGGCCAGAATTCAATACCTGTCCACAACAACACGGCGGCGACACAACTGTATACTGTAGCTCCAAAAGTGCCTCGCTGTCAcgatgtacacacacacacacatgcagtctgTATGTGCCCGTAAAGGGCTGGGGCAAAGGGCATCAGGGGCTCCAGCTGTGCAGAAAACATTATCAACTATCTCTGTTaagaaatgcaacacaaaacgCGATGGCCACAGTGCCCGGTCTGTGTGGCATGGCCTCACAGCAGGATAAAACACACTTAGCTTCTTAATCAGTGGgaaggaatatattttatttggaaagattgaaggattttttaaatatgcatttcatttacttCCATTATAattcctattattattgttattctgtgttCTTGCTTGATGCTTTGTAATGTGCTTTCTCACCATAAAAAGGCACTCTctacaatgtttaaaaacattgaacCCAGTATTAATGGGGAAGGCCACTACAGCCACACTGACAGTGGAGTCGGTTGTGCTCTGTAGCAGCAGGGAAGACAGCGTCTCAGTGTGTTAATGTCATGGTGTTCGAGTCCAGTAGGATTTTGTGCAATAGCTGGACAGAGTGGACAGAGCGGTGCTGACCGTGCCCAGTTTGTGTTTCCTGAAGTCAGGTTTAAGGGTCTGCAAGCAatgttgatattttattttgtaatttttcctGATAAATGTGTACAATCGCTCTGTATTCTGAACTCCCcacctgtactgcagctgccaATAAACACTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008850 True 5046 mRNA 0.52 28 13185439 13203264

Neighbor

gene id symbol gene type direction distance location
AMCG00008843 NA coding downstream 4598 13174193 ~ 13180841 (-)
AMCG00008846 NA coding downstream 27136 13155497 ~ 13158303 (-)
AMCG00008839 NA coding downstream 138852 13030570 ~ 13046587 (-)
AMCG00008834 cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179 coding downstream 215902 12966348 ~ 12969537 (-)
AMCG00008833 NA coding downstream 243203 12926593 ~ 12942236 (-)
AMCG00008848 zc3h10,LOC108412311 coding upstream 3625 13206889 ~ 13208547 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding upstream 16660 13219924 ~ 13224794 (-)
AMCG00008851 NA coding upstream 24357 13227621 ~ 13246570 (-)
AMCG00008849 NA coding upstream 65270 13268534 ~ 13273981 (-)
AMCG00008861 NA coding upstream 99448 13302712 ~ 13305069 (-)
G51875 NA non-coding downstream 162335 13022024 ~ 13023104 (-)
G51851 NA non-coding downstream 260783 12923204 ~ 12924656 (-)
G51811 NA non-coding downstream 264648 12920545 ~ 12920791 (-)
G51809 NA non-coding downstream 277106 12907321 ~ 12908333 (-)
G51724 NA non-coding downstream 525322 12657226 ~ 12660117 (-)
G51950 NA non-coding upstream 6287 13209551 ~ 13211199 (-)
G51947 NA non-coding upstream 11008 13214272 ~ 13215995 (-)
G51948 NA non-coding upstream 50589 13253853 ~ 13257619 (-)
G51965 NA non-coding upstream 96074 13299338 ~ 13300283 (-)
G52019 NA non-coding upstream 170119 13373383 ~ 13455852 (-)
AMCG00008844 NA other downstream 1083 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 87505 13090537 ~ 13097934 (-)
G51867 NA other downstream 183551 13000826 ~ 13001888 (-)
G51799 NA other downstream 288305 12895335 ~ 12897134 (-)
G51797 NA other downstream 293842 12890811 ~ 12891597 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other upstream 54434 13257698 ~ 13261822 (-)
G51974 rps26 other upstream 104158 13307422 ~ 13309425 (-)
AMCG00008860 NA other upstream 113603 13316867 ~ 13325227 (-)
G52099 NA other upstream 482071 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 735187 13938451 ~ 13983893 (-)

Expression


Co-expression Network