AMCG00008854 (rhebl1,LOC105901881,LOC103035598,LOC108435697)


Basic Information

Item Value
gene id AMCG00008854
gene name rhebl1,LOC105901881,LOC103035598,LOC108435697
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13368598 ~ 13377702 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008854
TTTCCGACAGTGTGTGTCGAGGGCGCCGCTGCCGTGAATAGgctgtttctgttttggttttgacGAGAGGAGAAGATTACAAGCTATTGGAAAAGTCCAGAGAAGTGGATATTAGACGTAAACAGACGAAGTGATTGACGAATCCGGCGGTCGAGACCGCGGGGTCTGCAGTTATCGACTCCAGTCGCGGGTGCCGGCCCTCAGTGGGAGCGCGAGGCCTGGCGCGCAGCTCGAGCCGCACTTGTTGAAAGTTTGTTGTTGTCACGTGACCCCAGGCAGGCGAATGCGGcgataaaaaaagtttttgtttcgcacaatttttaacatttttactttcattctttttattattatttattcatatcgCCATCAGTATTTTCTTGGGTTTTAAACATGCCTCAACCGAAACACAGAAAAATTGCCGTTTTAGGGTACCGATCCGTAGGCAAGTCTTCGCTCACTATCCAGTTTGTGGAAGGGCAGTTTGTGGACTCCTATGACCCCACCATTGAAAACACCTTTAATAAGATGGTGTCAGTGAATGGGCAGGACTTCAACCTGCAGCTCGTGGACACCGCAGGCCAGGATGAGTACTCCATCTTCCCCCAGTCCCACTCCATGGACATCCATGGCTATGTCCTGGTGTACTCGGTGACCTCCATGAAGAGtttTGAAGTGGTTCAGGTTCTCCATGATAAGCTGCTGGATATGGTTGGGAAAATACAGGTCCCAACTGTTCTTGTTGGGAACAAGAAAGATCTGCATATGGAGAGGTCAACGGCCGTGGAGGTATTCAAGAAGATCATCCTGGAGATGGAGAGGGCGGACGGCAACGCACCTGCAGAGGACAAGAAGTGCAGAGTGATGTAGAGACGCCACCTGGGACGCAGGGGCCAGAGCGGCACAGCCAGGccaacccccaccaccaccaccaccaccaccaccaccaccaccacctcctcctcctccttcaccaGCACACAGATGCCACGACTAGTTGAGCAATCACAGCATGCGGGGCCCACAGGCCCGGACAGCACAGACCTGGCTCTGGAGTGTTACAGCAGGGCTCCGTTAATCAGCCTGTCATGGTTCTGGacccaccccctccctgcccccaGCCACCCATCCACTTTAGAATTGAAGATTGGAGGTCCCAGGTTTAGAATGATGGAAATCCAGAGAATAAGGATGGTTAACGAACCAAACCACCATAACataaaaaacccaaacaaaacactgaggtgttaccaaaacaaaacaggttcTGCTTCTTCTAAATTCAGACTAAAAaatcagaatattttatttcctttacatttGTTCTAAACGTATTGAGTATAAGTCAGATTTACCCAGAGTGGCCCCTGTGTTCTTGATTTCTGTGGGGAAAAGGAAGGATTCAGACCAGTCCTAATCCAGACCTCTCCAcacccccctccaccacccGCAACCCACCACAGGTCAGACCGGAGTCACACAGTTACAGCAGCCACTGCTGATCTCTGCCAATCGGATCCCAACCTGCACCCAGCCAATTAAGGACCTTCACTGCAATTGAACTCCACCAATCCAAGCACTCTTACCACCCGTACAAGCCCGCCCACCCGCCACGCACCCCTTTATCTATCCTGATCCACTAGGCCTGGCTGAAGCTTGCCTGACGGCTTGAGCCTTTGTTGAAAATACGAGGAGACACAGTTTTGCTGTAATGGATGGAAGACAGCGTGCAGTGGGAGAAGGGGAAGAATTGGAGGCCTCACCTGACTGCTGCCTGAACTCCCATCCGATCCGGCTTCATTGGCGGCTTTTCCAGTTATTGTGCATTGGCTGTTGGTGTCAGCTGTGGGATACCGGGGGCTGGCTGTCAAATGCTGTGCTATGGTCCCGGGCAGTCACTGTACACAGTAGGAACGGCTCGGTTGAGGCTGTCTGCACCTGTGAAGTGATTGGATGAAAAATCTCAGCCTCAGTCGCAGATacaatgcttatttttttataaaggaaGTGTATACACTGTAAAATACAGCAAGGAACTCACTGGCagtatattttccattattttgttaCTGTAATAATTTGTCcctttttttatagaaaattaTAGATGGTTATATAAtttcctataaaaaaaaaaaaaaaaaaaaaatagtggaCCGTAACCTTTTTTTGGTAGTAAGCTGGCTGGATGAGgttgataatgatgattattattattttaagtaattatacTTTTGATAGTTGTATAGGCATCTCTGTctcttctttctcctcttcACTTCAATTTTTACTCCTTCAGGAAGATAAATAGAATTTGTGGGTAAAGTGGGGTTTCTGCTATtgtcacaaacaaacacacacacacacactcacttggGCACAccaacacactcacaaaaacaaagcctTTAAAACCGGTGCCTTGTCCTGACACCCTGGCTGTCAGTCTCTGCTGATCTAGAGAAACAGTGTCGCTGTTCCTCTGCTGagctccttttctttctcctgtcTTTCTTTCCATCGGTTGTTGTACTTAATTCCAAACGGGAGACATTTTCTTGTCGACCGTCCTGTGCCTTAGATTAACGGCATTCCTCTCCGTTCTGAAGTGGGGGGGGTGATTCTCTGCACTCGGAAGTGCAGGTTTGGGTATTCACCTCGACCTCGGGGGATTGTCGTCTCAGGGTTAACTGTTGTAATCTGGGAATATAGTTTGCCAAACTCCTGATACCCCTACCCTGTGGCAACTGCATCTAACTACACAGAAGAAGTTTTATTCCAGTGAGCACTGGaaattgtgtgcatgtgtgcatgctagtgtgtgtgtacatagaGATGGTGAACGAGTTGCCTGTGTTGGGGGTGTAGACAGTTCCACTATACAGCAGACCGTTGTCATCTGCCCAGAAAATAAGTTTATTCTATAGGGAAGTAGACAGTGCAGGATGCTGCCGGCCAGGGACAGTAAGTAAACCACAACAAATCAAGAACCTGAAACAAACCCTCCTCTGGGTTTCAACAGGCTGGATGTGTCAAGCTTTCATGCATCAAACATTAAACTCAATTCTCCTCTCTGGAGCTTTCAGAGAATTTTTACActtcagaataaatataatgtatgaaGAAACCCCAAATAGGCCTCACTatcaacccccaccccccaccactaCCACACTGGTGAAAGAGAGTAGGTAGAATCCCTGTAAGGTGGGGGGATTCTATACTTCTATTGACTGCAGTGTTGAGAGTGCAGCTCTGAGTAGTGTCCCCTGCAATCCCCCTGTGAAGAAAAGGCTCACAATATATAGTCTCCCAGTGTGTTTCAGGACCAGCTGACTGATTTCCTTCATGGGCAAGACTGGGGTGTTTTcctttgtaatattaatatatattgtgatgcgTTACTAGAAACTGCTTTACTTTGAAACAGAcctacaaataaacaaaaagaaggGCAATCGTTTGGCTCCCTGAGCGAATGGCTCCCTGGTGGCGGACGCAAGGGGAGGTGGAGTGTTGGATCACTCTGTTCTGTTAGGGTCGGGTATGTGTATATTAAGTAATTACACTGCTCCTAAACCGAGTACTCGGTCATGGCGGTTTATGGTTGCAGACTAAGcggttaatatatttttgggaAAAGTAAACCTTGTCATCcccttctctctgtttctctgtgtttgtctttcttttctgtcttcATAGATGGttgtaaatcaatacaaacatcATGAACACTAATCAGAATTCAGAATCACAGGTTCTTTTCTTTGGTTTGGATGTGAAGATGTTGACAAGTCCATTATTattctcagtttatttttttctctggtATTTATGTTTTGGCCACAGTTTACTGTGCCCTGTGCCTTACTCCCTATCCTCCTTTCTCACTCTCTGTCAGATTGCATATTCATAACACATGAACTGACATGCTAAAGTTATCACCCCCACCTCCCAGATGAAACCACTTAGACTTGATGGACAGTGCCCCCTGGTGATGTAGCTCAGCCCAGTGTACAGTGGTTCAGCAGAGGGGTTTGGTAGCAGGAGGttccgggtgtgtgtgtccccccGGTCGTTTGAGTGAGTGTCCTGAACCATCCTGTGCTCTGTAATTCAAACAGGAAGTGCAGGTCTCTTGACTCTGCAGGCAGTGGCGGTATAGGACAGTATAGTTCAGCTGGTGATAATAGCCCAGCTCCACCTCTAGGCTCAGTATGGTGTTCTGAGTAAAAGGGGATTGTTGaatgacattattattgttattattaataataatattattattattattattattattattccaatcTGGGAGCCCTTGGCTGCCCTAAGTAGTGTGTGAGTTTAAAGACCTCTATATAAGCAAGTGCCAGGTGGAGCGGTCACCCTCCCTGCGACTGAGTGTGTATTGTCACAGGGGGGTGGTTGGGAGAGCAACTGTCGATCAATGGGAAAGGGCTCCCCAGGCCTGGGTCCCTGGCTGCTTTCCTTGCTCCCGCTCCCCCTCCGAACCCTGGAGCATGCCCACCCTTGAGTGTAGGGACTCCAGTCTGTGTCTCCAGATCTTTGTCTGGAATGCATCATGGGTAAATTTGCTGTTGAAACAACTTTCTAAGGGCTAggaatgtcattttaaatagatgAAGCACCTGGGGAGCGATCTTGGAGCGAGGTCCTGAGGACACAGGTGTACCCCCCCAAAGGGCTGGACCTGTTCACCCTGCCGCCCAGTGTGGCATCGTTCTCTCTGGGCGCTGACTGGGGAGCCCCTGTAGGGTAGcgtgtgtgattatttttttgtttctctttttttttttggtggtgttgCTGCAGTTTGTTGGTTTTTCTCAGAATTGCTGTCTGCTTCAGGGCACCAGCTTAGTGTTTTGTCAGTGCAGCCCTGACTCCTCTCTCCTGGCAAACTTGCCACtctcacagtcacacagacagacagacagacactcactcatacagacactgactcacacacacaggcatacactcacacacacctctcttGCAGTCGCACTCAGAACAGAGACTTGCTGTAAACagtttttgtatataaataaattagttagtCCTTTGTA

Function

symbol description
rhebl1 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in small GTPase mediated signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including RHEBL1 (RHEB like 1).

NR:

description
PREDICTED: GTP-binding protein Rheb-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07208 RHEB; Ras homolog enriched in brain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008854 True 5096 mRNA 0.47 7 13368598 13377702

Neighbor

gene id symbol gene type direction distance location
AMCG00008855 NA coding upstream 2493 13355405 ~ 13366105 (+)
AMCG00008857 LOC102783756 coding upstream 21236 13333765 ~ 13347362 (+)
AMCG00008858 NA coding upstream 65970 13299306 ~ 13302628 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding upstream 79673 13281274 ~ 13288925 (+)
AMCG00008842 NA coding upstream 235923 13123231 ~ 13132675 (+)
AMCG00008862 kmt2d,LOC107563643 coding downstream 9705 13387407 ~ 13431241 (+)
AMCG00008863 prkag1 coding downstream 56755 13434457 ~ 13439625 (+)
AMCG00008867 NA coding downstream 139961 13517663 ~ 13534601 (+)
AMCG00008868 LOC106567041,LOC103368469,LOC105013543,LOC100705688 coding downstream 194824 13572526 ~ 13582004 (+)
AMCG00008871 NA coding downstream 239349 13617051 ~ 13628477 (+)
G51970 NA non-coding upstream 53546 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 56140 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 57825 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 181459 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 387823 12978864 ~ 12980775 (+)
G52044 NA non-coding downstream 99048 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 309137 13686839 ~ 13687780 (+)
G52234 NA non-coding downstream 750785 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 1164937 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 1175194 14552896 ~ 14553241 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 59168 13306495 ~ 13309430 (+)
G51939 NA other upstream 110958 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 143652 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 375873 12980804 ~ 12992725 (+)
G51812 NA other upstream 441804 12925238 ~ 12926794 (+)
G52349 NA other downstream 1104219 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1150116 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1360747 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1405341 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1429595 14807297 ~ 14811757 (+)

Expression


Co-expression Network