AMCG00008856 (rps26,RPS26,LOC106567051)


Basic Information

Item Value
gene id AMCG00008856
gene name rps26,RPS26,LOC106567051
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13306495 ~ 13309430 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008856
GCACTGTGGGATAGCGACACCTCACTCCATATCTGGATACCGCTCTGTGGATCCTTCCGAGAGAAAACAGTTCCTTCCTTCACAAGATTTacaacacacaatacattataaCGACATTTAcgtgtgtattattttgaaattactaGTTTTGTACacatgtgaataaaataaataattctgaagCGACTGCTGTTCGGATAAATTAAGAATTAGTTCCGGCGGAGGAAGAGTATAAATAAGGAAGTGCTGCGGTTTCCGGCCCTCTTTTCAGCCTCCTTTCCAAGATGACGAAGAAGAGAAGGAATAACGGCCGTGCCAAGAAGGGTCGTGGCCATGTCCAGCCTATCCGCTGCACCAACTGTGCCCGCTGTGTGCCCAAGGACAAGGCCATTAAGAAGTTCGTCATCAGGAACATTGTGGAGGCAGCGGCCGTCAGGGACATCTCCGAGGCCAGCGTCTTTGACTCTTACGTTCTGCCCAAGCTGTACGTGAAGCTGCATTACTGCGTCAGCTGTGCCATCCACAGCAAGGTGGTGAGGAACCGCTCCCGCGAGGCCAGGAAAGACCGCACCCCACCTCCCCGCTTCAGACCCAGTGGCGGCGCACCCAGAGCCCCACCGAAGCCCATGTAATGCGGGATGAACCTGTACATTTCTACATC
>TU65027
AAGGAAGTGCTGCGGTTTCCGGCCCTCTTTTCAGCCTCCTTTCCAAGATGACGAAGAAGAGAAGGAATAACGGCCGTGCCAAGAAGGGTCGTGGCCATGTCCAGCCTATCCGCTGCACCAACTGTGCCCGCTGTGTGCCCAAGGACAAGGCCATTAAGAAGTTCGTCATCAGGAACATTGTGGAGGCAGCGGCCGTCAGGGACATCTCCGAGGCCAGCGTCTTTGACTCTTACGTTCTGCCCAAGCTGTACGTGAAGCTGCATTACTGCGTCAGCTGTGCCATCCACAGCAAGGTGGTGAGGAACCGCTCCCGCGAGGCCAGGAAAGACCGCACCCCACCTCCCCGCTTCAGACCCAGTGGCGGCGCACCCAGAGCCCCACCGAAGCCCATGTAATGCGGGATGAACCTGTACATTTCTACATCAAAATTCAACAATAAAATGTCCATTTGAACAGACTGCATTGGGAGTTACTgtcttattataatttttgtgtgtatattgaTGTGTGGGTTGCCTGGTGAGCTGTGAACTGTGtttcctcctctcctgctgATATCTGGGCTCTGTCTAAAACCCCCGTTTCCCTGCCTGAGCTGATTCAACCTGAT

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).

NR:

description
PREDICTED: 40S ribosomal protein S26

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008856 True 661 mRNA 0.51 4 13306495 13309244
TU65027 False 610 TUCP 0.53 4 13306732 13309430

Neighbor

gene id symbol gene type direction distance location
AMCG00008858 NA coding upstream 3867 13299306 ~ 13302628 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding upstream 17570 13281274 ~ 13288925 (+)
AMCG00008842 NA coding upstream 173820 13123231 ~ 13132675 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 189451 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 208580 13074080 ~ 13097915 (+)
AMCG00008857 LOC102783756 coding downstream 24335 13333765 ~ 13347362 (+)
AMCG00008855 NA coding downstream 45975 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 59168 13368598 ~ 13377702 (+)
AMCG00008862 kmt2d,LOC107563643 coding downstream 77977 13387407 ~ 13431241 (+)
AMCG00008863 prkag1 coding downstream 125027 13434457 ~ 13439625 (+)
G51904 NA non-coding upstream 119356 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 325720 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 378650 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 409388 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 560729 12739197 ~ 12745766 (+)
G51968 NA non-coding downstream 186 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 1899 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 4160 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 167320 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 377409 13686839 ~ 13687780 (+)
G51939 NA other upstream 48855 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 81549 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 313770 12980804 ~ 12992725 (+)
G51812 NA other upstream 379701 12925238 ~ 12926794 (+)
G51756 NA other upstream 460262 12842715 ~ 12846233 (+)
G52349 NA other downstream 1172491 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1218388 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1429019 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1473613 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1497867 14807297 ~ 14811757 (+)

Expression


Co-expression Network