AMCG00008857 (LOC102783756)


Basic Information

Item Value
gene id AMCG00008857
gene name LOC102783756
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13333765 ~ 13347362 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008857
ATGGAAGAGGACGACGTGACGCTTAGAGAGCAGGTTTTCCATAACCGAGTTCGGGAGATCATTATCTGCGTCCTGCTGTTCGCCTGCCTCTACATCCTCGCCTACTTCATCATCACTCGCTTCAAGAAGAGTGCAGACTTCATCAGTGGGCTGTGGAATCTAGTCTTCCTGTTCTCCAATCTCTCTCTCGTCTTCCTCATGCCTTTTGCCTACTTTTTCACTGAGTCCGAGGGCTTTGCCGGCTCCAAGAAGGGCGTGATGGCGCGGGTGTACGAGACGGCCGTGGTGCTGCTTCTGCTGACCCTCCTGCTGCTCGGCCTGCTCTGGGTGGCGTCGGCCCTCCTGCACCATGACAATACAGCCAGGGACAGCCTGTATGACCTGTGGGAGTGTTACCTGCCGTATTTGTACTCCTGTATCTCGCTATTCGGAGGCCTGCTGCTGCTCTgtgggaCCTCCTGCTGGATTAGTCTGAATGTGGAGGTTCTGAAGAGAGAGTTTCTCACCATCCAGACCAGACGAATTGCACTGGagATGCGGAGGCGGGCATCTCCATGCCAGCGGAACCTGGGGTACCCCCTGGCCATGCTACTCCTGCTGGCTCTCACGggGGTGTGTGTTTTGATCGTGTGTTTTCACGTGCTGGAGTTGCTGTTCGATGAGACAGCCATGCCCAGAGGAATGGAGgaCCCCCGTCTGGGTGCTGCCTCGTTCTCAGTGTTCGGGTCTCTGGGAGCGGCTGGCCAGGTCATCCTCATCCTATACTTGATGCTGTCATCAGTGGTGGGATTCTACAGCTCGCCACTTTTCACTGGACTGCTTCCCAGAGCGCGTGACACCACCCTGACACAGATCATTGGAAATTGTGTCTCTCTGCTGGTCCTGAGTTCTGCACTGCCCGTCTTCTCCCGAACCCTTGggATCACTCGGTTTGACCTGTTGGGTGATTATGGGCGCTATAACTGGCTGGGCAGCTTCCACCTGGTGTTCCTCTACAACATGGCATTCGCCGTCCTTACATCCGCCTGCCTTATCAACAAGGTGACCTGGGCAGTGCAGAGGGAGCTCCTCCGTGCCTTCGGTCTCCACAACCTGCCACTTCCTGTGTCACGATCCAGGACTCCCAAAGGTCCGGTGACATCACAGTTGCTCACCTGA

Function

NR:

description
PREDICTED: limb region 1 homolog-like protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K25215 LMBR1L; protein LMBR1L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008857 True 1158 mRNA 0.56 13 13333765 13347362

Neighbor

gene id symbol gene type direction distance location
AMCG00008858 NA coding upstream 31137 13299306 ~ 13302628 (+)
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding upstream 44840 13281274 ~ 13288925 (+)
AMCG00008842 NA coding upstream 201090 13123231 ~ 13132675 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 216721 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 235850 13074080 ~ 13097915 (+)
AMCG00008855 NA coding downstream 8043 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 21236 13368598 ~ 13377702 (+)
AMCG00008862 kmt2d,LOC107563643 coding downstream 40045 13387407 ~ 13431241 (+)
AMCG00008863 prkag1 coding downstream 87095 13434457 ~ 13439625 (+)
AMCG00008867 NA coding downstream 170301 13517663 ~ 13534601 (+)
G51970 NA non-coding upstream 18713 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 21307 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 22992 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 146626 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 352990 12978864 ~ 12980775 (+)
G52044 NA non-coding downstream 129388 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 339477 13686839 ~ 13687780 (+)
G52234 NA non-coding downstream 781125 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 1195277 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 1205534 14552896 ~ 14553241 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 24335 13306495 ~ 13309430 (+)
G51939 NA other upstream 76125 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 108819 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 341040 12980804 ~ 12992725 (+)
G51812 NA other upstream 406971 12925238 ~ 12926794 (+)
G52349 NA other downstream 1134559 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1180456 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1391087 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1435681 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1459935 14807297 ~ 14811757 (+)

Expression


Co-expression Network