AMCG00008858


Basic Information

Item Value
gene id AMCG00008858
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13299306 ~ 13302628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008858
ATGGTGCGCTTCCCGTTGCCCTCTATCGGCCAGACGGTGAACTGCAGCCCGGCTCCCAGCGTGGCCAGACCGGGAGGGGCTTGTGAGATGCTGGCGGAATGTGGAGGCGGGgaatccagtccagtccagGTAAAACCGGAGCAATGCACAGAGACGGCGGAGACTGGGGACACGCTGCATATACACTACACCGGGAAACTGATGGATGGTCAGGTGATTGACACCTCACACTCCCGGGATCCACTGGTGGTGGAGCTGGGCAAGAAGACAGTCATCCCAGGGCTGGAGCAGAGCTTGCTGGGAGTCTGTGCAGGgCAGAAGATTAAGACCACCATTCCTTCTCATCTGGCCTACGGAAAACGAGGCTTCCCCCCAACCATCCCAGGGGATGCAGCGCTGCAGTTCGAGGTGGAGGTGGTGGCATTGGTGAGGCAGACGCCCTGGCAGCGGCTGGTGAGCGATGTGCTGCCCTTGCTGAGCTTGGCGCTGGTGCCCACCCTGCTGGGCCTGATCGGGCTCTACCTTTACAGCAAGGCCAAGGCCCAGGCGCCGGGCAGGAGGAAGAACAAGGACAAGAAGGGCAAGGCCAAGAAGAaatgacagcagcagcagcagcaaagataattataattgtaataatgatgatgataataataaac

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09576 FKBP11; FK506-binding protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008858 True 659 mRNA 0.58 6 13299306 13302628

Neighbor

gene id symbol gene type direction distance location
AMCG00008847 wnt1,LOC106567052,LOC106572674 coding upstream 10381 13281274 ~ 13288925 (+)
AMCG00008842 NA coding upstream 166631 13123231 ~ 13132675 (+)
AMCG00008841 ctdsp2,LOC106583267,LOC106572594,LOC105013607 coding upstream 182262 13105526 ~ 13117044 (+)
AMCG00008840 NA coding upstream 201391 13074080 ~ 13097915 (+)
AMCG00008835 NA coding upstream 234225 13063495 ~ 13065081 (+)
AMCG00008857 LOC102783756 coding downstream 31137 13333765 ~ 13347362 (+)
AMCG00008855 NA coding downstream 52777 13355405 ~ 13366105 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding downstream 65970 13368598 ~ 13377702 (+)
AMCG00008862 kmt2d,LOC107563643 coding downstream 84779 13387407 ~ 13431241 (+)
AMCG00008863 prkag1 coding downstream 131829 13434457 ~ 13439625 (+)
G51904 NA non-coding upstream 112167 13140563 ~ 13187139 (+)
G51828 NA non-coding upstream 318531 12978864 ~ 12980775 (+)
G51814 LOC106567079 non-coding upstream 371461 12927618 ~ 12927845 (+)
G51796 NA non-coding upstream 402199 12896349 ~ 12897107 (+)
G51736 NA non-coding upstream 553540 12739197 ~ 12745766 (+)
G51968 NA non-coding downstream 6988 13309616 ~ 13310773 (+)
G51969 NA non-coding downstream 8701 13311329 ~ 13312458 (+)
G51970 NA non-coding downstream 10962 13313590 ~ 13315052 (+)
G52044 NA non-coding downstream 174122 13476750 ~ 13476978 (+)
G52100 NA non-coding downstream 384211 13686839 ~ 13687780 (+)
G51939 NA other upstream 41666 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 74360 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 306581 12980804 ~ 12992725 (+)
G51812 NA other upstream 372512 12925238 ~ 12926794 (+)
G51756 NA other upstream 453073 12842715 ~ 12846233 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other downstream 3867 13306495 ~ 13309430 (+)
G52349 NA other downstream 1179293 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 1225190 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1435821 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1480415 14783043 ~ 14795184 (+)

Expression


Co-expression Network