AMCG00008865


Basic Information

Item Value
gene id AMCG00008865
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13459561 ~ 13473216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008865
CATAAGTGTATTTATATGatcatgaatataaatataaaacaaactctAATCTTGACCAGACGATAAGCAGATAAGCAACGACGCGGAGCTTTGTCCTGGGACGGATGTGTCCACTGAAGCTCTCTGTGGGTCGGACTCGGAGAGTGTGCTGGGCGGAGGCGAGGGTCGGTCCAATACGCAATAGCGCCCGCTTCTCTGCGTGAGGGTCCGGCGGACAGATTTCTGGACAAGGAGCTGGTTCGCCTGCTGATCTGACACAGATTTCGAAGTTGCGTCTCTTAAAACTTTGATATATTCATTATAATAGATACTATTATTTCTACTGTTACTATTGAGCGTCAATTCccggatttttttttattgatttttttagtttggtgAAGTTTAACActccaaagagagagagagagggatgggatTTAGTGTTCAGTACTGACTCTCCACACAAGCATGGACGAAGCGACATTTGATGGTTTATTTCTATATCATTATCCTCCCTTCGAAGTGGAGGCGTTTTTGTGCGGTTGAGCGAGAAACGTTTTCCACAGCCAGTCAAGCCCGAGCAGAGGACTCCAGCGGTGCTTATATGGACCAGAAGACCGGACGTGTGCCGTTTTGTTCTGGAATGAAAGGGATTGGGGCGATCTAGTGAAGACTGgagaaaagagacagagaaaacgaatctatacataaataaataacgattCAAGATAGGAATCGTGCCGTTTGGTTCCTGTGGTCATGGAGGGAGTCTCGGTTGCAGtgatgCCTAGTGCCCCGGTCAGCATGCCCCTCAGCGCCatgctgtctctctgtctcacctTGGCCTTGGCAGCGGACCAGCACAGGACAGGGAAGGTGGAGTGTGTCTGCCGCAATCGGCCCGAGTGTCACAACACCACCACCTGTCAGGGGCTCGTCTGCTTCAACATCCACACACACGGGGAAGTGAGTCTGGGCTGCTTCATGGAAAACACCAGGGCCCAGTGCCACAGTGTAATAAAAGACGTGTCCACCAACTGCTGCAGCACCCACCACTGCAACGAAGCCACCAGACCCACCAAGCGGGTGCTGTGTCGCACCCGCCCGGCCAGCATCCAGTATCCCGACCACCTGGAGAAGCCCCCCAGTGGAGGGGACGGCACCTATGGGGACATGTTTGATGAGTTCTGTACGTCGGGCAGCGGCACCGGGCTGCCCTACCTTGTGCAGAGGACTGTGGCCCGACAGATCTCCCTGGCAGAGTGTGTGGGCTTCATCGCTTCAGACATGACGTCGAAGAACTCCAGCACCCAGCTGTGGCTGATCACACACTTCCATGAGCTGGGTTCCCTGTACGACTTTCTGCAGGGGGCGGCCAGCGGGCTGGACCCCTCCCTGTGCCTGCGCTTCTGCCTGTCTATCGCCTGCGGCCTGGTGCACCTGCACACCGAGATCCTGAGCACCCAGGGCAAGCCAGCCATTGCCCACCGCGACATCAAGACCCGCAACATCCTGGTCAAGAGCAACCGGCAGTGCTGCATCGCTGACCTggggCTGGCAGTGATGCACTCTCAGGCCAACGACTTGCTGGACATCGGCAATAACCCGCGGGTCGGGACCAAGCGCTACATGGCCCCCGAGGTCCTGGAAGAGAGCATTCGCACTGACTGCTTTGAGTCCTACAAGCAGACGGACATCTGGGCCCTGGGCCTGGTGCTGTGGGAGATCAGCCGGCGGACTGTGGACTATCGCCCCCCGTTCTTTGACGTGGTGGGGGCGGACCCAAGCTTCGAGGAGATGCGGAAGGTGACGCTGTCAGCCATCATCAAAATTATGAGGGAGTGCTGGTCCCAGAGCCCCTCCGCCCGGTTGACCGCGCTTCGTGTCCGCAAGAGCCTGTCCAGACTGCAGCCTCTGGAGTTGGACAAGATCAAACAGGATGTGTAGACGACGCTGACCACTTCCTTACCCAGCTCCCAGTGCTGATCTGCTCACCTGCCCTGCTGTGGGAAGAACTGATTTTCTCCAGCAGGGGGTGGTGTGGATTTGCATGCCCGACAAAATGCCCAACAAGACCAACAAAACCCCAGCAGTCTCACTGACCTCGAATGCCTGTCTCTGTCAGTGTGGGCGTCTCCTGAACTCAAACACACTGGGAGCAAACTTGTCTCTGTGCCTCCTTGCCTATGTATATCTGTGTCTTTGTGCCTCTGTGCCTCCATGCCTGTTTCTCCTTGTCACTGTGCCttcatctctgtgtctctgtctccatctctctgtctctgtgccttcgtgtctgtctgtgtctctgtgccttTGTGTCTcggtctctgtgtccctgtatctctgtctctgtctccatctctctgtccttctgtcTGGGCCTCTGGGCCAAAGGGATTGTGACCTGCTGTCTCTTGGTCAGTGTAACTGGGATCAGCTGCACACTATTTGCTCAAGTCTATCGttttttatcatttgtatttgGTAGGAGGATGCCTGTTTTTATGctctgtgtattgttttgttcactAGCAGGTCCTCCTCTCCACATAGGAACTGACCTGTATTTACAGTGAAAAGCACTTTCACTTTCTTCTCATATTTTGTACCAGTCTATGATTACTTTCTTTAATGCCTTAAGTTTATTCACTGTTTAAGTACAGTGACAtttatgtatagatatatatatagagagagagagagattatatatattactagTAGTATTGGTATTATTGATATTTTCCTAATCAAACGTTACCCTGTATAGTGCAGAATTTTGCTTCCTCACTCAAGCATCAAAATATacacttattttgtttaaaaacaaatgcagacagatttgttaattagttaacaataataataaatcttaaaCCCTTATTTTAAGTGTTGTCCACTTTAACAgaatgtgttttcttatttaacagccaagaaaaaaattaatggaACCATCAAAGGGAAAATATTCCCTGTTTTAATagttcatataaaaaataagtccTGCATCAGCAATTTAATGTCCTGTAGGTCGGAGAACCCATTATATTATCTCAAGGTGTAGTTACCCAGTGTACACACTAGAGTGCAGCAGATACTGCACTGTTTTACTGATTCAACTGCTCTATCCTGTCAGCTGTGAAATTCCTCAGCCTGTGTCTGAATTGCATTGCACACATAGTCACTCATTCGGGATCAGTTATACATCTGCATTCCTTCACCGCACACTGACACGATCAAAACACGACTCTGGAATTAAGTTCTATGCATATTTCTATTTTACGTTTGTGATGTAAAAAACAGGAATGTAGCTTTTGCTTCCCATTATTCATATGTTTGTTGCAGTATTGATTGGATTGTGGACTGGTCTGGCTTCTGAAATACAAtgatttcatttgtgtgtgtgagagagagagagagagagagtgaaataatgtgtgtgagagagagatggtttgtgagagaaagaaagataaaatgtatatgagagagagagactgtgtgggTGGGTGCGGAGGTCTCAGACTCCTTCAAAGCTGCAGTCTGGCCTTTGAGTGAAGGTGGGTTATTTATAAAAGAGTGATAAAAGGGAGGAGAGTGTGTGGGAGGGGATgctgtgcctgtctgtgtgctgtctctctctctagagAACAGCTGTGCAGggccctgtctctgtctgtctttgagATGAGCATGTGTCCCCTTAAGTTTGGTGTGTGAGACAGTTTGTCTTAAAGTAgtattatcattgttgttgatgttgttgttagtactattgttattatttgtatgagAGCTAATcccaattattgttttttattattataccttGTACCTTGAGTCAGTCCAATAAATCCTTAACGAACTTGGTGGTCTAATTCAGTGTAGTACATCAGGAACCTCTAGGGGGCAGCACTCAGCATTGTACTGTGTTGCCATTGGGAATATTTTTAATCCGCACTAGGGGGCTGCCTGAGAGTTCTGGGTTTGTTGCAGCTGGTAAGGACCAGTCCAGTGCTGAGGTGCCAACTCTGTGATCATCCTCTGCTTTGGGTGTCATGGATGGCCATGGAAACCACAAGGCACCTCATGACACTGAGACAGCACCGTGATTCCAATAAATGaagaacttaaataaataaatcaacaatttttctcctta

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0048264 determination of ventral identity biological_process
GO:0034405 response to fluid shear stress biological_process
GO:0060840 artery development biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008865 True 4146 mRNA 0.48 9 13459561 13473216

Neighbor

gene id symbol gene type direction distance location
AMCG00008864 acvr1ba,LOC108275853,LOC107716207,LOC107695803,LOC107708859,LOC107563637,LOC107570552 coding downstream 3432 13439922 ~ 13456129 (-)
AMCG00008859 NA coding downstream 128559 13328969 ~ 13331002 (-)
AMCG00008861 NA coding downstream 154492 13302712 ~ 13305069 (-)
AMCG00008849 NA coding downstream 185580 13268534 ~ 13273981 (-)
AMCG00008851 NA coding downstream 212991 13227621 ~ 13246570 (-)
AMCG00008866 NA coding upstream 7762 13480978 ~ 13487619 (-)
AMCG00008869 NA coding upstream 64777 13537993 ~ 13540286 (-)
AMCG00008874 NA coding upstream 107200 13580416 ~ 13584831 (-)
AMCG00008873 NA coding upstream 111871 13585087 ~ 13608948 (-)
AMCG00008872 NA coding upstream 165441 13638657 ~ 13643375 (-)
G52019 NA non-coding downstream 3709 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 19935 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 159278 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 201942 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 243566 13214272 ~ 13215995 (-)
G52131 NA non-coding upstream 298344 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 349897 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 532511 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 654023 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 798758 14271974 ~ 14275087 (-)
AMCG00008860 NA other downstream 134334 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 150136 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 197739 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 275205 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 361627 13090537 ~ 13097934 (-)
G52099 NA other upstream 212119 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 465235 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1220614 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1367491 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1559131 15032347 ~ 15057206 (-)

Expression


Co-expression Network