AMCG00008870


Basic Information

Item Value
gene id AMCG00008870
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13629173 ~ 13638246 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008870
GTGGAGGGTAGGCAGGGATGAGGGCAGGCAGGCTGTGTACACTGGAGGAAGTATCATGTTGCGTGGAAGCGAGTGACAAGGGCCCGTACAAAGACAGAACCACAGGCGAGCCGACGTGTTAGCATGTAGCTTAAGAAGGTAATAactgtgtttgcttgtttaaataggtaaattaaatgacaataGACGGGCGTGCTGTGTGATTTACCCAGCTCCTTCCAGCGGAGTTATTAAGACCCAAGACAGCACTGGTTGGATGTGTGTGTCGTGAATTTTCGGGGGCTGTATCCGCTAAACGAACCCACGGCAGCGGATTGTCTGATGCGGAAAGGGTCCGCTTGAACCCGAGCAGGAGAGAAATGGCCACGAATTGACCCGCATTACCACATCCCGGGCCATTGTACCGAATCAGCCTGAACCGAGGAAGGTCTCACTACAAGTCCTCATGGCGACACTGCCGAGAAAATAAGAGGTTAATTGTTCTGGAAAAAGATGATCCTAACCAGAAGGTGCTGCTTTGCAGACAACACGCTTCCTGTCCAGCTCGTTGGAAATACTGCCGCGTCCTTTTAACTGCGGAAGATTGCTAGTCTATCTCGATGAAGAGAGAGTGCAGTGAGAGAGCGAGACAAACGCAGTAAGTTGGTGGGATGACGGCCCTGAGCTCCAGGTGTGCCTTCTACCTGGGCTTCCTGGTGGGCACCTGCACCCTGTACTTTCTGCTGCGCCAGGTGTGGAATGAGAGGAGCCTCAGCCCCCAGCCTGAGATCCTGGAGAAGGCAGGGAGTGGAGGGGGGCAGGCAGGAGGGCGAGTCAGCTTGGAAGATGAAAGCTGGAGACTGGACGGCTCTGCGCTTATCAACTTAAAGCACCCCCATCTGAAAGGGGAGGACAGCCGTGTGGCAGACGAGCTGTACAAGACGGTGCGTGTTCTGTGCTGGGTGATGACAGGTCCCAGCAACCTGGAGAAGAAGGCACGGCACATCAGGGCCACCTGGAGCCGCCACTGCAACGTGGTCATCTTCATGAGCTCCACGGAAGACCGGGACTTCCCCACTGTGGGGCTGGGCACGGCTGAGGGGCGCGACCAGCTGTACTGGAAGACCATCCGCGCTTTCCACTACGTCCACCAGCACCACGCAGCCGAGGCAGACTGGTTCCTCAAGGCCGATGATGACACCTTCGTAGTGGTGGACAACCTGCGCTGGATCCTGGCCAACTACACCCCCGAGGAGCCCATCTACTTTGGCAAGCGCTTCAAGCCCTACGCCAAGCAGGGCTACATGAGCGGCGGCGCGGGCTACGTGCTGAGCAAGGAAGCGCTGCGGCGCTTTGTAGAGGGCTTCCGCACCAAGGTGTGCACCCACACCACCCCCGTGGAGGACCTGGCTCTGGGGCAGTGCATGGAGAAGGTGGGCGTGAAGGCTGGGGACTCCCGGGACACCCTGCACCGCGAGACCTTCCATCCCTTCGTCCCTGAGCACCACCTCACCAGCAAGTTCTCCAAGAGCTTCTGGTACTGGAACTACTGCTACTACCCCATCGTGGAGGGTCCTCAGTGCTGCTCTGACCTGGCCATCTCCTTTCACTACGTGGACGCGGAGCTGATGTACACACTGGAGTATTACACCTACCACCTGCGTGCCTATGGATACCAGCACCGCTACCAGCCTCGCCTCCCCGAGGGCATGGAGAAGCTGGGGGAGAGGGAATGGCCCGTGTGGGGACCAGAGCAGAGCCAAACGGAGCAAGCAAGGGCGGGGCCAGCGGGGTCTGTGGCAGAGAAGGAGTCGTTCAGAAACAGGACTGCAGACACAAAGGAGACTCAGCGATAGGGGCttgtgtgaggaggaggaggtggtggtggtggttttgGGGGGTGGTTGGGGGTATTAGCAGGGAGGAATTGAGGAATGAGGAATTTGTAAGATGCATGTAAGATGCAAATGAGGAATTTGCATCTTGCATACGATCACACCTCTTAAAGTGACCTTGCCTGAGGGATGCTATATGTGTGACACACCACCAAGCACAGAAGTGAACACGGGAGCACACCCCAACACCCCCACCCAACACTGCAGCCTCTGGTGCTGCCCTGCCTGTCCTGTATGCGCCACACTGTGCGAGTTTGCACGGGGGGCCGGGGTGGGAGTGACTGAGAGACACTGCTGCTCGATTTGCTCCAGAAATGGCATTGTGGTGGGTGGCTAAGCAAGACAAATGCGGTAGAGGATGTGTAGACTGACGCAGCTGTTGGTCCTGCTCAAGTGAGGCCGTGACGCGGCTCTTGGGCCTGGACCTGGAGTACTTTGCCAGCTTGctcccttttatttattattattattattttattagagcTTTGAAATTACACAATGGgacaattaatttcttaattgtgtaattggatctgtttttttttttttttttttttttccttcctacAGCTGAACTCAAAGATGATTTGATTTGTACACTTGCATGATGAATTGGgcctgttgttttgttgttgtcggtGGTTCATTACTGGCTCTGCTCGGGAATCTGTCAGCCGTGCCCGAGACTGGAGCACACAGGCCGCGGTGCACAGTGGGGCGGCACCAGGGCTGAATAACAACCCTGTAGAAGACCTGACACCCGATCATGCAGACCGGTCTCTTGTGTGTTTGGTCGAGGGGGGTACAATGCTGAGAACtgacacccccctcccccttctctgACAATTAGTGCTTTTTACAGCTCACCAAATCTTCTTGTGCTAACTGTCAAGGCGAACCACTTCTTAATCCTTACAGGTGTTCACAGAAACGGCAGCCCTGTGTGGCTGGGCTCTTGTATTCTCTTTGTGTGTAAAGAGGACAGACCTTTATACTTAACTGTgctgaaaacaactgaaaaatatatcttATATTCTAAATGTTTAActtgatttttttcatttcaaactcGTAAACACtgttcttctttctcctcctccttcataGTGACCATGGTGAGAAATCGCCATCTTGAGAAAAGAgcatttactttgttttcccCCTCAAGGGATATATTGTcagttcttgttttattttcagatagttgtcatattttatatttctaaatctctctctctctctctctctctctctctctcatatatatatatatttgaattatatgtATAAACCTTGATGAGAATCTTATACAGACCTGGATGGTATGTGCCTGCACTGGACTGAATTGGTATTATGGGATGTGTGTGGTGCATTTTCTTACCACACCATTCACATATCAAAATCCAGCAGAAATGGCTGTGGTGTACAGgggattcatttttttattaaaataattaagcattattattatatcatcatTAAGAATGCCGGTCCAGTCCAAATTGGTACAAGTGTCTCTGCAGCAGGTCAGTCCAGGCCAGGCCAGTCActgactctgcagcagcagttgTTGATACCATAACTCAAGTGGAATTGTTGCACatatttgatttacatttaaaaaaaaaacaaaaaaaaacaattcaaacttcttttttttt

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008870 True 3535 mRNA 0.51 5 13629173 13638246

Neighbor

gene id symbol gene type direction distance location
AMCG00008871 NA coding upstream 696 13617051 ~ 13628477 (+)
AMCG00008868 LOC106567041,LOC103368469,LOC105013543,LOC100705688 coding upstream 47169 13572526 ~ 13582004 (+)
AMCG00008867 NA coding upstream 94572 13517663 ~ 13534601 (+)
AMCG00008863 prkag1 coding upstream 189548 13434457 ~ 13439625 (+)
AMCG00008862 kmt2d,LOC107563643 coding upstream 197932 13387407 ~ 13431241 (+)
AMCG00008875 NA coding downstream 46322 13684568 ~ 13685905 (+)
AMCG00008877 NA coding downstream 50521 13688767 ~ 13720249 (+)
AMCG00008876 NA coding downstream 96728 13734974 ~ 13738084 (+)
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding downstream 177179 13815425 ~ 13823056 (+)
AMCG00008885 NA coding downstream 261045 13899291 ~ 13904755 (+)
G52044 NA non-coding upstream 152195 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 314121 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 316715 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 318400 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 442034 13140563 ~ 13187139 (+)
G52100 NA non-coding downstream 48593 13686839 ~ 13687780 (+)
G52234 NA non-coding downstream 490241 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 904393 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 914650 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 922473 14560719 ~ 14561249 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 319743 13306495 ~ 13309430 (+)
G51939 NA other upstream 371533 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 404227 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 636448 12980804 ~ 12992725 (+)
G51812 NA other upstream 702379 12925238 ~ 12926794 (+)
G52349 NA other downstream 843675 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 889572 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1100203 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1144797 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1169051 14807297 ~ 14811757 (+)

Expression


Co-expression Network