AMCG00008871


Basic Information

Item Value
gene id AMCG00008871
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13617051 ~ 13628477 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008871
CAGGAATTGGTGCTTAGGGAAGTGTGCGAGAGGAAGATGGCTGCTTCCATAGCAAGATGCTTGAAGGGGTTGTATGCTGTGTTTTGGTTGTGTGCTTTGCCAGTATCGGGCTTTTTGAATTTAGAGGAATTGAGTGAGATGAAATACGGCATACAGATCCTCCCCGATCCCGTCATTAAGGGTCAGGCGAGGTCTGAGGACGTTATGCTGGTGTCCTCCAAGTACAGGCAGCTGTATGAGTGCCGACTGCCCCCCCAGGCTCTGCGGTTCCAGCGGGACACGCCACCCGAACCCGACCCCCAAGGCTACTCTGGCCCTGGCATTGCAGAGCTACTGAGGCCGATGGATGGAGCCCCCTGTCTGGTCAAGACGAAGGACTGGTGGACGTATGAGTTTTGCTTTGGGAAGCACGTCAGACAGTATCACTTGGAGGATTCTGAAATTAAGGGGGATGTACTGTACCTTGGCCATTACAGCACGGAGTTTGACTGGAATAATGAAACTGCCAAGGCCTCCAAGCGGCACAGACTGAAACGTTACCACAGCCAGACCTACGTCAACGGCTCCAAGTGTGACCTCAATGGAGAACCCAGGGAGACTGAAGTCAGATTCCAGTGTGAGGAGGGCTCCGGGGATTACATCGCCCGAGTGGATGAGCCGCAGTCCTGCAGCTATGTGCTCACAGTCCACACCATGCGCACCTGCCACCACCCCTTCCTGCGCCCTCCCTCCGCCAACAAGCCCCTCCCCATCACCTGCCAGCCTGCCCTCACCCCAGAGCAGTACATGGAGTACGTCCGGGCTCAAGTCTCGGACACCAAGCGCAAAGTGCAGCAGATCTCTGAAGAGCTGAAGAACCTGGATGAGATCCTGTCCAAGGATGAGGGGGCAGAAGGACAGAATGGGGGAGTGGAGGAGGACTTCAACACCGAGGATGTGGATTTCAGACTGCAAGGCGACAACCCCCCACCTGAAGAGGACTCCATCGAAGACCTGGAGGATGCAGACTTCTGGGATGGGGTTACCAAGCCTGAGAGGAACagagtggaggaggaggtgttggcggaaggggagggggagGCTGATGTAGATGGACCGGATGCTCAGTTTGTGGATGATTTTGAAGAGGAGGGCATCGGGGATGAGAAGTTCAATTTCAAAATCATAACTGACTCCTCTGACCTGATGAAGTTCATCAATCATCTGCAAGAAAGCAACAGGAAGCAGGCTGTTTCCGAGAAAGACAGCGTGAGGGAGGAGGCAGTCGGACAGACGAGGGGACTGGAAgaggtgggggaggaggaggaggaggaggaggaggacgatgAGCAACTGTTGCAGGAGTTTGAAGAAGAGATGGCTGACCTCTCCGTGCCCTCCTCCAAAATCGGGGAGATCAAGGAGGAGATGCAGAAGGAGTTTGACAACATCATAGATGAGgCGCAACAGGAGCTGGAGACCGAGGGCCTGAAGGGCGAGTTTGACCGCAGAGAGGCCACCAAGACCCTGGGCACCACGCTGGAGAAGCTGCTAGATCGACTGGAGGACAGGGAGGTGCAGGAGCGGGGGGCTGGGGAAGGGGTGGGGGACAGTGCCGACCACGCTCGGGGCAGCCCCAGTCTGGCCCCCCGTCAGCCTGAGGAAGCTGCGGACGACCAAGTAAAAATCCGAGTTACTAAATATAAGCCAGGCGGCAGCCCCGAGACACAGCTGAAAGTGCAGGAGATGAGGGAAGGAGACCCCCAGATGCAGCAGATTAAGGATGTGGTGAAAGAGCAGTTAGAGAAGGCTGGTCTGAAGGCAGAAGGGAAGATTGAGGTGAAGATCCTGACTAGGAAGAACATCGAGGAGGACGGGGACCAGTGGCTGACGGAGGAAGACACTAAGTCCTTCCGGGAACTCCTCATCAACCTCCTGACTGGGGGTACGGAGGAGGTGTACAAGGAGCAGAAGAGGCAGCAGGAGTTGGAGAATAATTACAGGTTTGTGTGGGGGGAGAAGCAGGACGAGACGCAATCCACGGGGACCACGGACTCTGACGACCTGGACTTCTGAGACTGTTCCTTGCAGGGGTGGAGGGGTGGTTTTGGTGGCACTTaatacaaagacacacactGATGTCAAATCCACACCAGGCCTGCCTGCTTCGGGGTTCACAATGGTCCACGCTGGGCCATGATACGGTCTTTGCAGCCAGATGACATGCTAGCAGCATCAGGTGGATTTCTGAAAGTGGGCGGAGCACTGAATTCCAGTCTGGAGTGAAATGTCTCCTTTCTCTGCGATGTTGCTACACATTGGTTTGTTTCCCTATGTCACTCTGTTGGCACTCTGGTTGTGTGCAGGGTTCTCCCTGCTGCAGCTCATGGggttagctttttttttttttgattttcatttagAAGAAACTCAAAACTGCTTGCTTGGCAAAATCCtgaaaggatgtttttttttaacttatgtgattccatttcaaatccagcccccctcccaccccccccttCAGATCCAGCAAAGCTTGGTCACTCTCTCCTTGCcccttgtttgtcttttgtgtaCATGTTGCTGCCTCTTCCTGTTGGTGTACAAAGACACTGTTACGTGCTGCTAAAATCGCTCCTGCACTAAGTGGGTGGAGCTCTTGAAAGAGAGTGGTGGGGAGGGtacaatgttaataataaaataaaaataactttacaaTCTGAAGACAGGCCTATATGAGCTTGTCAGTCCTGAAGGCCTTTGAGCTGAAGGATGAGGGACATCTTCTGCActgatttattatgtttattattattgttatgattatgatttattcTGTACTACAGGGATATCCAATTTCAGTTCTGGAGGTCTGAAGGGCTTTCTAATTTGCATTGCCCCTCGTGCCTAGTAAGGCCAAGCTATGCAGCCACCTGTGTTTTATGTCCCTAGTGGTAATTGGTCACTATTTGAATGGGGTCTATAAACCCCCTTTAGGGCTGGagctgaccccccccccccccccaattcaGTGTCCCAACTGAATCGTGGACCCTGTCCTGCTGTTAGACGAGAGTGATTGAGATGCCATCTTTTTCCTACAATGCACAGGGTCTTCTGCTTGGCAATTCCTGCCTGTTACAACCTCCCTTAATCAATAGTTTTTTATCCCCCCAAAATCCCTAGCATACCAAATGTAAATAGAGGCACAATAAATATTGACTATGCCCTGGACCGAATCAAAACCGACCTGTGTGAATGGCAAAATATAAACCTGTACCCATTTGTGCTTTCATTTAGGTCTAGGTCAaacttttgtaattatttttcttactaTTGCTGTGATTGACTGCATTACACTGCCATAGTAACAGCCAGGGTGGGAAACACGTCCCCTGCCATCTGTACAGATTGTATTCATAATCCCAATGAAACTGAGGGGCCCCTGTCCTGCCTTTTAGACCGGTCTCAATCTCATCATGGGTATTAATGACATCATTGCCCTTGTCCAGGTACCCGAAGGATCCTATTTCTTATTTTGCTCTTTAGtccaagaatgtgttttttgcatttctggCACAGTGTAGCAGACTAAAGTTTCTTGGATTCTTTTAgcaagaattgagtctcctgtCCTTCTGGCAAGCCAAGGAGAATGTGGAGTTCAGCACTCGCcacaaaacaagcaagcaagcaaaataatgtataaatcaataaaataacactcACCATCCCATTTATGTCAAAAGCAGACTAACATCGCTTTCTCAGAACTGCTGAACATTTAGTTAAgcccttttgaaaaaaaaaaaaaaatcataaaatccaAGAagccaaacaaatgtatatttaagcaACTCTGACCTGAAAGAGATCTCCTCCTTTTTTGAGGTTTTCTATAACCCTATTTAAACAAAAGTGAAGATGTTGTTTAAGAACAGACCTGGTGAGTCAGTTAAAACACACTGTCTACCCATGTTGGGTAGTCTTTGGCATACATAGagaaacatgattttaaaatggcacTGTGCTCACAAGTCGCATCAAGTACCACTCTGACCTTTAATCTGCAggacacatacacaaaatagtgtTTCCCGTTTCCGGGCTGGCTTTTTTATAACCTTTCGGAAGCAATTGAAAAGGgctgttctttctttcttgtaagATATGTGAATAATTGTAGTACCTTGTTAATGATTGTAAATAATTCTGCTAGGGGATGGGCTGGGGTACTTGTGCAATGACAGATGTTGATGTATGCAGAGTTGtctggtggggggtgggttaTTAAATCGATACAAACCATCTTCCTGTCTCCTTGACTATTTGAATTGATTCGTTGGTCTCTTCTCTGCAATGTAAGTGTCATAATAcgatatatataatataatcttaaCTTGTGTGGA

Function

GO: NA

KEGG:

id description
K10088 OS9; protein OS-9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008871 True 4391 mRNA 0.49 15 13617051 13628477

Neighbor

gene id symbol gene type direction distance location
AMCG00008868 LOC106567041,LOC103368469,LOC105013543,LOC100705688 coding upstream 35047 13572526 ~ 13582004 (+)
AMCG00008867 NA coding upstream 82450 13517663 ~ 13534601 (+)
AMCG00008863 prkag1 coding upstream 177426 13434457 ~ 13439625 (+)
AMCG00008862 kmt2d,LOC107563643 coding upstream 185810 13387407 ~ 13431241 (+)
AMCG00008854 rhebl1,LOC105901881,LOC103035598,LOC108435697 coding upstream 239349 13368598 ~ 13377702 (+)
AMCG00008870 NA coding downstream 696 13629173 ~ 13638246 (+)
AMCG00008875 NA coding downstream 56091 13684568 ~ 13685905 (+)
AMCG00008877 NA coding downstream 60290 13688767 ~ 13720249 (+)
AMCG00008876 NA coding downstream 106497 13734974 ~ 13738084 (+)
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding downstream 186948 13815425 ~ 13823056 (+)
G52044 NA non-coding upstream 140073 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 301999 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 304593 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 306278 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 429912 13140563 ~ 13187139 (+)
G52100 NA non-coding downstream 58362 13686839 ~ 13687780 (+)
G52234 NA non-coding downstream 500010 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 914162 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 924419 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 932242 14560719 ~ 14561249 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 307621 13306495 ~ 13309430 (+)
G51939 NA other upstream 359411 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 392105 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 624326 12980804 ~ 12992725 (+)
G51812 NA other upstream 690257 12925238 ~ 12926794 (+)
G52349 NA other downstream 853444 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 899341 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1109972 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1154566 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1178820 14807297 ~ 14811757 (+)

Expression


Co-expression Network