AMCG00008875


Basic Information

Item Value
gene id AMCG00008875
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13684568 ~ 13685905 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008875
ATGAGCCCCACTCTTAGGTGGCTGCTCTTCTGCCAGCTGCTGCTGACTGACACTTTGCACTGTGGGGCACAGACCCCGCCCACTCGGGAAGGGAATGGATCCAGGACACCatccctggaggaggaggagcagctaGCTACAGATCCCCTTCCAGAGCTGGGAACGCCGTCTGGATCAAAGCAGCAGGCGGAGGAGGATGAGAGCTCCCCCGAGGGGGTGTACCGGGTGCAGTCTGCTCGCCGCGTTGTGACTGTTCTATCTGGGATGCTGGGTAGCCGACTGAAGCCTCCGTCTGTGCAGGCTGCTTCCACTGCAGCTTCCCTAGGCTGTGAGGACTTGGCGGCCCCCGTGTCGGTGGACTCTCCCTTGGCTCTGTTCCCACACAAGCTCCTGGGCCTGGCTCTGGTGCCGGTGCTGGTGGCCAGGGGATGCCGCCGGGAGGCTGAAGCATTGGTGCTGCGTTTGTACTATGATTTTGGGGTGGCTGACACGGACGAGCTGCTGTTGGAGCTGGAGGACCTGATTGAGAAGAGCCCCCCCAGGACACCCCTCCCTGGAGCTAAGGGAGGGGCCagtgggaggaggggggaggggatggGTGAAGATGAGGGGCATCTGCAGGCTGTGATGTTCAACATTGGGCAGCTGGCGCAACCACTGGAAGCGGAGAACGGCACAGCACCGGGGGGGGCATGCTGGGGCTGGACCAGGGTGAAGGGGACCCTGCTGCTGGGGGAGGGGACAGGGGGTGATGGGGTGGGGGAGCTGCAAGAGGCCATGAGGGAGTGCGAGAGTCTGGGGCCGCAATGTTCAGGCGTCTCTGCCACTAACAGCAGCGAGGGCTCCGGGAGGTATTCCACAGTGCTCCGGAGAGGCAGCCGGATCGTGCCCTCAGCAGACTCGGAGAGCTGGGTACAGGATTGCGGAGACTCCCCAGAGCAGGggcaggagggggaggaggaagaagggATAGGGAGGCGCGCCAGACGCAGCTCGCAGACGGAGTGCACGGACCAGACGGAGGAGAAGGTGTACAGTGTGGTGGAGTGGATCCCGGCGGTCAGCACCCTCTACAACCTGGGAACGGCCGTCTACTATGCTGCCGTCAACTGCAGTGACACGGCCAAGGAGAGGGCACTGATGTCTGCTGTGGACCTGGGCACTGACGCCCTGATGGCCATGACGGGGGGCACGGCGGGCATCGCGGGGTACGCTTTCGGTGCGGGGATGAAGACCGGGGTGAAGGCGGGCATTAAGTACCTGCTCAACAACATGAAGCAGGGGGAGGACATCGTCTTCAACCAGGACTACTGGACTGCCGCCACCATCATCCAGTAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008875 True 1338 mRNA 0.64 1 13684568 13685905

Neighbor

gene id symbol gene type direction distance location
AMCG00008870 NA coding upstream 46322 13629173 ~ 13638246 (+)
AMCG00008871 NA coding upstream 56091 13617051 ~ 13628477 (+)
AMCG00008868 LOC106567041,LOC103368469,LOC105013543,LOC100705688 coding upstream 102564 13572526 ~ 13582004 (+)
AMCG00008867 NA coding upstream 149967 13517663 ~ 13534601 (+)
AMCG00008863 prkag1 coding upstream 244943 13434457 ~ 13439625 (+)
AMCG00008877 NA coding downstream 2862 13688767 ~ 13720249 (+)
AMCG00008876 NA coding downstream 49069 13734974 ~ 13738084 (+)
AMCG00008880 cacnb3a,LOC107724200,LOC107696997 coding downstream 129520 13815425 ~ 13823056 (+)
AMCG00008885 NA coding downstream 213386 13899291 ~ 13904755 (+)
AMCG00008886 LOC107737655 coding downstream 220397 13906302 ~ 13921627 (+)
G52044 NA non-coding upstream 207590 13476750 ~ 13476978 (+)
G51970 NA non-coding upstream 369516 13313590 ~ 13315052 (+)
G51969 NA non-coding upstream 372110 13311329 ~ 13312458 (+)
G51968 NA non-coding upstream 373795 13309616 ~ 13310773 (+)
G51904 NA non-coding upstream 497429 13140563 ~ 13187139 (+)
G52100 NA non-coding downstream 934 13686839 ~ 13687780 (+)
G52234 NA non-coding downstream 442582 14128487 ~ 14128691 (+)
G52361 NA non-coding downstream 856734 14542639 ~ 14545754 (+)
G52364 NA non-coding downstream 866991 14552896 ~ 14553241 (+)
G52372 NA non-coding downstream 874814 14560719 ~ 14561249 (+)
AMCG00008856 rps26,RPS26,LOC106567051 other upstream 375138 13306495 ~ 13309430 (+)
G51939 NA other upstream 426928 13253814 ~ 13257640 (+)
G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 other upstream 459622 13222320 ~ 13224946 (+)
AMCG00008837 march9,LOC107664138,LOC107593952,LOC107714987,LOC106583285 other upstream 691843 12980804 ~ 12992725 (+)
G51812 NA other upstream 757774 12925238 ~ 12926794 (+)
G52349 NA other downstream 796016 14481921 ~ 14483255 (+)
AMCG00008910 NA other downstream 841913 14527818 ~ 14542248 (+)
AMCG00008917 smarcc2 other downstream 1052544 14738449 ~ 14754644 (+)
AMCG00008920 NA other downstream 1097138 14783043 ~ 14795184 (+)
AMCG00008919 zbtb45,LOC104952775,LOC105021497,LOC101077905,LOC102207372,LOC101487628,LOC102796714,LOC100704009 other downstream 1121392 14807297 ~ 14811757 (+)

Expression


Co-expression Network