AMCG00008878



Basic Information


Item Value
gene id AMCG00008878
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13720710 ~ 13734038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00008878
CCTTACACCGGTTCCTTCCGCATACAATCAAGCTGTCAGAGAGGTCGGGCTGAAGAAAGCCGGTGTATCAAACTTGGTTCTTCTTTCATCTGGCCAAGTCCCAGGACTGTCATCCCCCCTCCAGTCAACTTTTTCGGTCAGGGGGGAagaggagaagagaagaaaaaagataaagCAAGGTTGTCCCGGAGATGAGGCTATTTCCACGGCGACGCACCTCCCCCCTGAAGCTAGCTGTGCTGGTGGGGACCATCTTCCTCATCGCCTTGGTGGTCATGCAGAGGGATGTGGGTGGGGTCTCCTCCTCTGAGCCCTGGTTGAGGGACCTGGTGGACAGGAAGGAGCGGATGATTGACATGATGATGGGGGCAGTGAATAACCTCAGGGACTCCATGCCTCGCTTCCAGATTGGGGCCCCCCAACCCCCAGAGCAGCCCCCGGCTGCCCCCTCGGACTCCTTGAGCTGTCCCCCTGGCTTCTACAGCAAGGCAGAGCTGAGGCCGGTCTTGGAGCGCCCCCCCCAGGACCCCAGTGCACCCGGGGAGGATGGTAAAGCCTTCCTGAAGGAGGGGCTGTCCCctgaggaggagaaggagaaggaggcgGGCATGCAGAGGCACTGGTTTAACCAGTTCGCCAGTGACCGCATCTCCCTGCATCGCAGCCTGGGGGAGGACAGCCGCCCAGTcgaATGTGTGGAGCGCAAGTTCCGCCACTGCCCGCCGCTGCCCACCACCAGCGTGATCATTGTGTTCCACAACGAGGCATGGTCCACGCTCCTGCGCACCGTCTACAGCGTGCTGCACACCTCGCCCGCTGTGCTGCTCCGGGAGATCATCCTGGTGGACGATGCCAGCACTGCAGAGCACCTGAAGGAGCGGCTGGAGGAGTATGTGAAGCAGCTGGGGATCGTGCATGTGCTGcggcagagggagaggaaggggtTAATCACAGCTAGGCTGCTTGGGGCAGCGGCAGCCACGGGAGAGGTGCTCACCTTCTTGGATGCCCACTGCGAATGTTTCCACGGCTGGCTGGAACCCCTGCTTTTCCGCATCGCAGAGGAGCCGACGGCCGTGGTCAGCCCTGACATCACCACCATCGACCTCAACAGCTTCCAGTTTGGCCGGCCGGCGCCCAGCAGCCGCGCCCACAACCGCGGCAACTTCGACTGGAGCCTGTCGTTCGGCTGGGAGGGCATCCCCACGCATGAGAAACAGCGCCGCAAGGATGAGACATACCCCGTCAAGACTCCTACGTTTGCTGGCGGACTCTTCTCCATCTCCAAGTCCTACTTTGAGCACATCGGGACGTATGATGCACAGATGGAGATCTGGGGAGGGGAGAACGTGGAGATGTCCTTCAGGGTGTGGCAGTGTGGCGGGCAGCTGGAGATCATCCCGTGTTCAGTGGTGGGTCACCACCGCTTTGGTGATATCACTGACCGGCTGAAGCTGAGGGAGGATCTGCAATGTAAGAACTTCTCCTGGTACCTGAACACTGTGTACCCTGAGGCATTTGTCCCGGACCTCACGCCTGTGCTGTTTGGAGCGGTGAAGAACGAGGGGTCTCAGAGCTGTCTGGACGTGGGGGAAAACAACAATGGAGGCAAGCCTTTGATCATGTACAGCTGTCATGGCATGGGCGGCAACCAGTATTTTGAATACACGTCACACAAGGAGCTGCGGCACAACATCGGGAAGCAGCTGTGTGTGCATGCCTCGGGGGGCCCGGCGCAGCTTGAGCTGTGCCAGCTGAAGGGGCAAGGCACTCAAGTGGCACCGGAACAGATGTGGGAGATCACCGGGGAGAAGCTACTTCGAAACCCTGCCTCTGGGCAGTGCATCACCCTCCTGGGTGGCCAGCCAACCATGGGCCAATGTAACCCTTCTAATGCCAACCAGCACTGGTCCTTCAGCTGACCGCCTCCTGCTGTGCGTATACCTCACCTGCCATCCAGACCCCCACAGTCAGGGGGgcagctcctcctcctgctgtcTCTGGTGGTGGTGTTGGGTGGTGGCTTAGCAGATACATTTTCAAGACTTACATGATCAATAAGCTACTGGAGATACTAGGGTCTTAACTGGGATGAAGGGAGACTGAACTATACATGGGCCATTTTTGATTGactgttctgtttattttgtttacctcCTGTCCTCGTCGGAGTACAAGGCTGAGCTCAGGCCTGAAGGACTCACACTGTGGAATGAccatgttttcttaattttaattttttaaatcacttttttggtttgtttgtttgaaggaTCAGGGTAGAGGGAGGTGTGGCTGTAGGGGGGGAAGTGTGGGTGAGGGGCAGGGAactcattttgtgttttccccAGCCGAATGAAGACTAATTCAGAGCAGCAGGGTGGAGGGGAGTTGGGGTGGAGAAATACTTCTACAATGCCTTTACCATTCACTGTTCAAATGCATTGGgagagattttttatttttttatttgtgtgctcATTTCACCAAAGAGTgcttaatgtttttcttcaatttcttcccctaatatttgtattataatgaaCTGAGGTCAGTCACTAAACCCAGCCCCCAGTACAAGGGTGTGAACTTGTGTGTCTTTTCAGTTTATGCAGTTTTACGCCGGATGTGTTTTTCGGTTTTAGAGACTAAGTTAAAACTGCGCTGACAGTCCGTGCATATCGCTGCACCAGAGACAACCCTGGTTAGGACAGCGCCCTGGCAGGACATAGGGGACGGGCGCTTCACACCTCTCCAAAGGGGTGCTTACATCATTACTCTCATCCCCTCTTCTCAGCCCTGAAGCTGATTATTCTCTTCCATCTCTCTTTGTGTAAGGTGAAGGCTCTACGAGCTCAggttataaaatgtatgttctgGGCTATTTCACCCTAACTTTGCACCTGGGGTGTCATTTATGGtgattatgtatgtttttgtaataatattagtaatagaTAGTAGTTCCTCAGTGAAACTTTGACTTGTGTCCAGCATGTAGTAATGATCTGCAGAATGTAATTGAATTGGTCGGGGACAGTCATGTTAAACTCTTGGGTTCTGAGTAGCGGACAAAAGAACACAAAGTGGCCCCCCTTTACCCTCCCTAGCTTTGGTTGGAACTGCTGTGAACAGTTCCAGCCCAAGTACAGGCAGCTCCCAGCTCCCAGCTCCCACAGGGCTGCATTCCCACCTGCCCTGGACACTGGCAATGTCCAATGACCTGACAGGCGGCACGGCCAGGATCTTGTTTGACTAGCGCAGAATTCTAGTTATGTTCACTAACAGCGTCCTCGCCTAACGAGATGGGGCTAGAGATGGGGAGAGGTGGGGCTAGTGAAGGCCGGGATGCACCCTGTGGAACCAGGGCAGGAGAACCCCAGGAGCTCGGTCTGTAAGAATATTTACAGACCAGAGGTGGCAGCTAGCCCCCGTTGCTCTCTTGCCAACAAGAAAGGCCCTGGCAGTGGGAACCCCGGAGAATGGCGGTCTCAGTCCACTCCAGTCCCTTGAGGGATCTCCGTTTTTACTTCTGCCTCAAAGGCTCTTATCGATACCAAACGTGGGAGTTAAAGCAGCTGTGTGTATTCCAGAGGGTAAGGGGCTGCTAACTGACAGGTGCTTATGAAACTCGCAGTCACCATCAGTCAGTGGGCGTGAAGTGTTCCTCTTCTGATGAACCTCGTCGGTCAGTGTTTCCCAGCCCTCAGCCTTGGACCCCCCAGTGTCAGGCTGGCGTgggttccagctgagctctcgaTGACTTCACTAACTCATTAGGGTAAATCTATACCCTAATGagtttattgatcattttaaacatttgggagattagttatatattttcacatttaagagCACCTGATTGCTCCAACAATGGTAAGAGTGAGTTACAGCCAGTAATTTGTACAATATAGTAATTGGGAGCTCACCTGGAACGGAAGGCAGCAGAACCGCAGGCCCCCAGCAGCAGGGCTGCGAGACATGGATGTGAGTGGAAAGaatagtgtaaaaaaaaatgtaaagaatggtgtgatttaaaatgtatttttggacAAATGTCTATGCCgctgaataaatgtaaataaaaaatgtagtcCTTGGGTGTCAGCTGTGG

Function


GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00008878 True 4117 mRNA 0.53 11 13720710 13734038

Neighbor


gene id symbol gene type direction distance location
AMCG00008872 NA coding downstream 77335 13638657 ~ 13643375 (-)
AMCG00008873 NA coding downstream 111762 13585087 ~ 13608948 (-)
AMCG00008874 NA coding downstream 135879 13580416 ~ 13584831 (-)
AMCG00008869 NA coding downstream 180424 13537993 ~ 13540286 (-)
AMCG00008866 NA coding downstream 233091 13480978 ~ 13487619 (-)
AMCG00008879 NA coding upstream 3844 13737882 ~ 13771390 (-)
AMCG00008882 ddx23 coding upstream 97169 13831207 ~ 13839926 (-)
AMCG00008881 LOC103358261,LOC101472065,LOC103037018,LOC100705424,LOC104932892 coding upstream 132616 13866654 ~ 13881491 (-)
AMCG00008887 LOC103368342,LOC104967533,LOC101064836 coding upstream 157242 13891280 ~ 13897417 (-)
AMCG00008891 neurod4,LOC105013535,LOC106567036 coding upstream 283312 14017350 ~ 14021503 (-)
G52019 NA non-coding downstream 264858 13373383 ~ 13455852 (-)
G52041 NA non-coding downstream 281084 13438088 ~ 13439626 (-)
G51965 NA non-coding downstream 420427 13299338 ~ 13300283 (-)
G51948 NA non-coding downstream 463091 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 504715 13214272 ~ 13215995 (-)
G52131 NA non-coding upstream 37522 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 89075 13823113 ~ 13830315 (-)
G52214 NA non-coding upstream 271689 14005727 ~ 14006439 (-)
G52233 LOC101154678 non-coding upstream 393201 14127239 ~ 14127501 (-)
G52296 NA non-coding upstream 537936 14271974 ~ 14275087 (-)
G52099 NA other downstream 33973 13685335 ~ 13686737 (-)
AMCG00008860 NA other downstream 395483 13316867 ~ 13325227 (-)
G51974 rps26 other downstream 411285 13307422 ~ 13309425 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 458888 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 536354 13135732 ~ 13184356 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 204413 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 959792 14693830 ~ 14715322 (-)
AMCG00008923 NA other upstream 1106669 14840707 ~ 14865988 (-)
AMCG00008934 NA other upstream 1298309 15032347 ~ 15057206 (-)
AMCG00008951 ap2a2,LOC106587467,LOC106562310 other upstream 1735636 15469674 ~ 15505517 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_09964646_09973298 GALNT6 coding CI01000001 null 9963928 ~ 9973998 (-)